Uncharacterized protein
type: ProteinReference
xref: uniprot F6SMC2 141
xref: PTHR10535:SF0
organism: Macaca mulatta

TAF (TBP-associated transcription factor) family
type: ProteinReference
xref: uniprot Q9NEW8 107
organism: Caenorhabditis elegans

General transcription factor IIB
type: ProteinReference
xref: uniprot E2RPG1 306
organism: Canis lupus familiaris

Uncharacterized protein
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot F7H5J8 209
organism: Macaca mulatta

RNA Polymerase II s109 a122 rs3
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

Uncharacterized protein
type: ProteinReference
xref: uniprot A0A1D5REN8 4
organism: Macaca mulatta

uniprot Q8W0W3 358
type: UnificationXref
id: Q8W0W3
db: uniprot

TBP s8 sa14 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

uniprot P62380 383
type: UnificationXref
id: P62380
db: uniprot

DNA-directed RNA polymerase II 16 kDa subunit,putative
type: ProteinReference
xref: uniprot O96150 155
organism: Plasmodium falciparum

TBP s5 sa1 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

uniprot Q63801 84
type: UnificationXref
id: Q63801
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot F6SGR6 139
xref: PTHR10917:SF0
organism: Ornithorhynchus anatinus

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q9NEX2 234
organism: Caenorhabditis elegans

PARTICIPANT STOICHIOMETRY r41 498
type: Stoichiometry
physical entity: Complex (TFIIE_beta/TFIIE_beta)
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r41 499
type: Stoichiometry
physical entity: Complex (TFIIEalpha/TFIIEalpha)
stoichiometric coefficient: 1.0

uniprot Q62311 81
type: UnificationXref
id: Q62311
db: uniprot

ncbitaxon 3702 28
type: UnificationXref
id: 3702
db: ncbitaxon

Uncharacterized protein
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot F6YR60 273
organism: Macaca mulatta

ncbitaxon 237561 332
type: UnificationXref
id: 237561
db: ncbitaxon

uniprot Q9R1C0 108
type: UnificationXref
id: Q9R1C0
db: uniprot

RNA Polymerase II s109 a122 rs4
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

uniprot D3ZY89 18
type: UnificationXref
id: D3ZY89
db: uniprot

RNA Polymerase II s103 a217 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q7SAL1 179
xref: PTHR10917:SF0
organism: Neurospora crassa

Mus musculus
type: BioSource
xref: ncbitaxon 10090 82

General transcription regulation
type: Pathway
pathway component: STATE TRANSITION LEFT ATP- Complex TATA box Promoter TBP TBP associated factors TFIIA complex TFIIH complex TFIIB RNA Polymerase II TFIIF TFIIE -RIGHT Complex TATA box Promoter RNA Polymerase II TFIIF TBP TBP associated factors TFIIH complex TFIIA complex TFIIB - TFIIE- ADP- r58
pathway component: HETERODIMER_ASSOCIATION_LEFT__RNA_Polymerase_II-_TFIIF-RIGHT__Complex__TFIIF_RNA_Polymerase_II_-_r55
pathway component: HETERODIMER_ASSOCIATION_LEFT__TBP-_TBP_associated_factors-RIGHT__Complex__TBP_TBP_associated_factors_-_r36
pathway component: STATE TRANSITION LEFT Complex TATA box Promoter RNA Polymerase II TFIIF TBP TBP associated factors TFIIH complex TFIIA complex TFIIB -RIGHT TFIIH complex- transcription complex- TFIIB- TFIIA complex- r59
pathway component: STATE TRANSITION LEFT transcription new RNA complex-RIGHT mRNA- TTF2- TATA box Promoter gene termination - RNA Polymerase II- Complex TBP TBP associated factors - re13
pathway component: STATE_TRANSITION_LEFT__transcription_elongation_complex-_TTF2-RIGHT__transcription_new_RNA_complex-_r61
pathway component: HETERODIMER_ASSOCIATION_LEFT__TFIIFalpha-_TFIIFbeta-RIGHT__TFIIF-_r32
pathway component: STATE_TRANSITION_LEFT__Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIA_complex_-_TFIIB-RIGHT__Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIB__TFIIA_complex_-_r54
pathway component: HETERODIMER_ASSOCIATION_LEFT__TATA_box_Promoter-_TFIIA_complex-_Complex__TBP_TBP_associated_factors_-RIGHT__Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIA_complex_-_r53
pathway component: HETERODIMER ASSOCIATION LEFT TFIIH complex- Complex TBP associated factors TBP TATA box Promoter TFIIB TFIIA complex - TFIIE- Complex TFIIF RNA Polymerase II -RIGHT Complex TATA box Promoter TBP TBP associated factors TFIIA complex TFIIH complex TFIIB RNA Polymerase II TFIIF TFIIE - r57
pathway component: HETERODIMER_ASSOCIATION_LEFT__Complex__TFIIE_beta_TFIIE_beta_-_Complex__TFIIEalpha_TFIIEalpha_-RIGHT__TFIIE-_r41
pathway component: STATE_TRANSITION_LEFT__ATP-_GTP-_CTP-_UTP-_transcription_complex-RIGHT__transcription_elongation_complex-_r60
xref: PANTHER Pathway P00023 1
comment: MODEL_NOTES=Panther Pathway: P00023 General Transcription Factors for RNA Polymerase II. This pathway focus on the synthesis of messenger RNA in eukaryotic cells in the nucleus. Medline=10364255 Medline=14963331 Medline=1876184 Medline=1956398 OMIM=189972 PMID: 10364255 PMID: 14963331 PMID: 1876184 PMID: 1956398

RNA polymerase II subunit A C-terminal domain phosphatase
type: ProteinReference
xref: uniprot Q9P376 270
organism: Schizosaccharomyces pombe

TATA box Promoter s52 sa33 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r57 533
type: Stoichiometry
physical entity: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIB/ TFIIA complex)
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r57 534
type: Stoichiometry
physical entity: TFIIE
stoichiometric coefficient: 1.0

uniprot Q8JHG4 96
type: UnificationXref
id: Q8JHG4
db: uniprot

DNA-directed RNA polymerase V subunit 5A
type: ProteinReference
xref: uniprot Q9M1J2 186
xref: PTHR10535:SF2
organism: Arabidopsis thaliana

PARTICIPANT STOICHIOMETRY r57 532
type: Stoichiometry
physical entity: TFIIH complex
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r57 535
type: Stoichiometry
physical entity: Complex (TFIIF/RNA Polymerase II)
stoichiometric coefficient: 1.0

uniprot Q2T9L9 293
type: UnificationXref
id: Q2T9L9
db: uniprot

PARTICIPANT STOICHIOMETRY r57 536
type: Stoichiometry
physical entity: Complex (TATA box Promoter/TBP/ TBP-associated factors/TFIIA complex/ TFIIH complex/TFIIB/ RNA Polymerase II/TFIIF/ TFIIE)
stoichiometric coefficient: 1.0

uniprot A0A3Q2TVW3 126
type: UnificationXref
id: A0A3Q2TVW3
db: uniprot

TBP s113 sa9 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

TBP s17 sa18 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot F7CRN2 145
xref: PTHR10917:SF0
organism: Xenopus tropicalis

uniprot P29084 281
type: UnificationXref
id: P29084
db: uniprot

General transcription factor IIF subunit 1
type: ProteinReference
xref: uniprot A0A1D5R7P4 238
xref: PTHR13011:SF0
organism: Macaca mulatta

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: uniprot Q63801 84
organism: Rattus norvegicus

TAF4 isoform 2
type: ProteinReference
xref: PTHR15138:SF18
xref: uniprot H2REF4 47
organism: Pan troglodytes

TATA box Promoter gene
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s104 a218 449
comment: SPECIES_TYPE=GENE

uniprot Q9FJL8 184
type: UnificationXref
id: Q9FJL8
db: uniprot

uniprot Q5ZHP3 347
type: UnificationXref
id: Q5ZHP3
db: uniprot

Neurospora crassa
type: BioSource
xref: ncbitaxon 367110 167

PTHR11618:SF5
type: RelationshipXref
id: PTHR11618:SF5
db: PANTHER Family
relationship type: By Homology

PTHR11618:SF4
type: RelationshipXref
id: PTHR11618:SF4
db: PANTHER Family
relationship type: By Homology

uniprot Q92759 267
type: UnificationXref
id: Q92759
db: uniprot

uniprot P41900 291
type: UnificationXref
id: P41900
db: uniprot

TATA box Promoter gene s104 a218 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter gene
stoichiometric coefficient: 1.0

ncbitaxon 684364 312
type: UnificationXref
id: 684364
db: ncbitaxon

RNA polymerase II subunit F
type: ProteinReference
xref: PTHR10773:SF12
xref: uniprot E2RPD9 129
organism: Canis lupus familiaris

ncbitaxon 10116 17
type: UnificationXref
id: 10116
db: ncbitaxon

uniprot F7BVN4 316
type: UnificationXref
id: F7BVN4
db: uniprot

Transcription termination factor 1
type: ProteinReference
xref: uniprot Q15361 196
organism: Homo sapiens

TFIIA complex s13 sa16 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIA complex
stoichiometric coefficient: 1.0

PTHR13011:SF0
type: RelationshipXref
id: PTHR13011:SF0
db: PANTHER Family
relationship type: By Homology

General transcription factor IIF subunit 1
type: ProteinReference
xref: uniprot Q05913 242
organism: Drosophila melanogaster

uniprot Q5ZKX3 78
type: UnificationXref
id: Q5ZKX3
db: uniprot

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot P60027 255
organism: Pan troglodytes

Pan troglodytes
type: BioSource
xref: ncbitaxon 9598 6

TATA box-binding protein-associated factor RNA polymerase I subunit C
type: ProteinReference
xref: uniprot Q6PDZ2 89
xref: PTHR15319:SF1
organism: Mus musculus

uniprot Q9DBA9 268
type: UnificationXref
id: Q9DBA9
db: uniprot

uniprot Q99JX1 101
type: UnificationXref
id: Q99JX1
db: uniprot

Transcription initiation factor TFIID subunit 7
type: ProteinReference
xref: uniprot Q9VHY5 112
organism: Drosophila melanogaster

uniprot Q7QA87 225
type: UnificationXref
id: Q7QA87
db: uniprot

ncbitaxon 9606 49
type: UnificationXref
id: 9606
db: ncbitaxon

General transcription factor IIA subunit 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot A0A2I3TKG9 203
organism: Pan troglodytes

uniprot F1R9S3 308
type: UnificationXref
id: F1R9S3
db: uniprot

uniprot B0BNE2 127
type: UnificationXref
id: B0BNE2
db: uniprot

uniprot P53040 62
type: UnificationXref
id: P53040
db: uniprot

General transcription factor IIH subunit 1
type: ProteinReference
xref: uniprot A0A2I3SS53 246
organism: Pan troglodytes

uniprot P29052 328
type: UnificationXref
id: P29052
db: uniprot

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot E2R5J2 116
organism: Canis lupus familiaris

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s112 sa10 409
comment: SPECIES_TYPE=PROTEIN

STATE TRANSITION LEFT ATP- Complex TATA box Promoter TBP TBP associated factors TFIIA complex TFIIH complex TFIIB RNA Polymerase II TFIIF TFIIE -RIGHT Complex TATA box Promoter RNA Polymerase II TFIIF TBP TBP associated factors TFIIH complex TFIIA complex TFIIB - TFIIE- ADP- r58
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: STATE TRANSITION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r58 521
participant stoichiometry: PARTICIPANT STOICHIOMETRY r58 523
participant stoichiometry: PARTICIPANT STOICHIOMETRY r58 525
participant stoichiometry: PARTICIPANT STOICHIOMETRY r58 524
participant stoichiometry: PARTICIPANT STOICHIOMETRY r58 522
left: Complex (TATA box Promoter/TBP/ TBP-associated factors/TFIIA complex/ TFIIH complex/TFIIB/ RNA Polymerase II/TFIIF/ TFIIE)
left: ATP
display name: STATE_TRANSITION_LEFT__ATP-_Complex__TATA_box_Promoter_TBP__TBP_associated_factors_TFIIA_complex__TFIIH_complex_TFIIB__RNA_Polymerase_II_TFIIF__TFIIE_-RIGHT__Complex__TATA_box_Promoter_RNA_Polymerase_II__TFIIF_TBP__TBP_associated_factors_TFIIH_complex__TFIIA_complex_TFIIB_-_TFIIE-_ADP-_r58
interaction type: STATE_TRANSITION
right: TFIIE
right: Complex (TATA box Promoter/RNA Polymerase II/ TFIIF/TBP/ TBP-associated factors/TFIIH complex/ TFIIA complex/TFIIB)
right: ADP

PARTICIPANT STOICHIOMETRY r55 490
type: Stoichiometry
physical entity: Complex (TFIIF/RNA Polymerase II)
stoichiometric coefficient: 1.0

RNA Polymerase II s27 sa23 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

uniprot P79011 121
type: UnificationXref
id: P79011
db: uniprot

uniprot H2QBM1 43
type: UnificationXref
id: H2QBM1
db: uniprot

uniprot H2PZC5 320
type: UnificationXref
id: H2PZC5
db: uniprot

Transcription termination factor 1, mitochondrial
type: ProteinReference
xref: uniprot Q9EPI8 200
organism: Rattus norvegicus

PARTICIPANT STOICHIOMETRY r55 488
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q9VNZ3 189
xref: PTHR10917:SF0
organism: Drosophila melanogaster

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot O70422 253
organism: Mus musculus

uniprot A6H914 377
type: UnificationXref
id: A6H914
db: uniprot

uniprot F6R525 314
type: UnificationXref
id: F6R525
db: uniprot

TBP associated factors s112 sa10 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r55 489
type: Stoichiometry
physical entity: TFIIF
stoichiometric coefficient: 1.0

uniprot Q9FIF4 233
type: UnificationXref
id: Q9FIF4
db: uniprot

TFIIA-alpha and beta-like factor
type: ProteinReference
xref: uniprot Q8R4I4 229
organism: Mus musculus

uniprot F6YKC3 380
type: UnificationXref
id: F6YKC3
db: uniprot

uniprot Q7Z7C8 94
type: UnificationXref
id: Q7Z7C8
db: uniprot

uniprot Q7SAL1 179
type: UnificationXref
id: Q7SAL1
db: uniprot

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s64 sa42 443
comment: SPECIES_TYPE=PROTEIN

ncbitaxon 284812 51
type: UnificationXref
id: 284812
db: ncbitaxon

Uncharacterized protein
type: ProteinReference
xref: uniprot F1MME0 26
organism: Bos taurus

uniprot Q9BIB4 232
type: UnificationXref
id: Q9BIB4
db: uniprot

TFIIB s19 sa20 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIB
stoichiometric coefficient: 1.0

uniprot P35269 241
type: UnificationXref
id: P35269
db: uniprot

uniprot Q05913 242
type: UnificationXref
id: Q05913
db: uniprot

TFIIA-alpha and beta-like factor
type: ProteinReference
xref: uniprot Q9UNN4 235
organism: Homo sapiens

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s35 sa26 393
comment: SPECIES_TYPE=PROTEIN

uniprot Q9EPI8 200
type: UnificationXref
id: Q9EPI8
db: uniprot

DNA-directed RNA polymerase II subunit RPB3
type: ProteinReference
xref: uniprot F6VRF4 142
xref: PTHR11800:SF2
organism: Macaca mulatta

RNA Polymerase II s109 a122 rs1
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

uniprot Q27272 71
type: UnificationXref
id: Q27272
db: uniprot

TBP associated factors s35 sa26 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

STATE TRANSITION LEFT Complex TATA box Promoter RNA Polymerase II TFIIF TBP TBP associated factors TFIIH complex TFIIA complex TFIIB -RIGHT TFIIH complex- transcription complex- TFIIB- TFIIA complex- r59
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: STATE TRANSITION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r59 507
participant stoichiometry: PARTICIPANT STOICHIOMETRY r59 510
participant stoichiometry: PARTICIPANT STOICHIOMETRY r59 509
participant stoichiometry: PARTICIPANT STOICHIOMETRY r59 511
participant stoichiometry: PARTICIPANT STOICHIOMETRY r59 508
left: Complex (TATA box Promoter/RNA Polymerase II/ TFIIF/TBP/ TBP-associated factors/TFIIH complex/ TFIIA complex/TFIIB)
display name: STATE_TRANSITION_LEFT__Complex__TATA_box_Promoter_RNA_Polymerase_II__TFIIF_TBP__TBP_associated_factors_TFIIH_complex__TFIIA_complex_TFIIB_-RIGHT__TFIIH_complex-_transcription_complex-_TFIIB-_TFIIA_complex-_r59
interaction type: STATE_TRANSITION
right: TFIIA complex
right: TFIIH complex
right: transcription complex
right: TFIIB

uniprot Q1K5K1 166
type: UnificationXref
id: Q1K5K1
db: uniprot

uniprot A0A2I3REX6 5
type: UnificationXref
id: A0A2I3REX6
db: uniprot

uniprot F6Y6M6 249
type: UnificationXref
id: F6Y6M6
db: uniprot

TBP-associated factors
type: ProteinReference
xref: P00658
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: TBP-associated factors Synonym: TATA box binding protein-associated factors Accession: P00658
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TBP-associated factors
member entity reference: Transcription initiation factor TFIID subunit 9B
member entity reference: Transcription initiation factor TFIID subunit 7-like
member entity reference: Transcription initiation factor TFIID subunit 2
member entity reference: Uncharacterized protein
member entity reference: Transcription initiation factor TFIID subunit 12
member entity reference: TATA-box-binding protein-associated factor 2
member entity reference: Transcription initiation factor TFIID subunit 6
member entity reference: TATA-box binding protein associated factor 11
member entity reference: Transcription initiation factor TFIID subunit 11
member entity reference: TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
member entity reference: Transcription initiation factor TFIID subunit 9-like protein
member entity reference: TAF4 isoform 2
member entity reference: Transcription initiation factor TFIID subunit 8
member entity reference: Transcription initiation factor TFIID subunit 6b
member entity reference: Transcription initiation factor TFIID subunit 7
member entity reference: AGAP005731-PA (Fragment)
member entity reference: Adenylate kinase isoenzyme 6 isoform a
member entity reference: TAF1C isoform 5
member entity reference: TATA-box binding protein associated factor 6
member entity reference: Bromodomain transcription factor
member entity reference: Spermatocyte arrest
member entity reference: TATA-box-binding protein-associated factor 6
member entity reference: TATA box-binding protein-associated factor RNA polymerase I subunit C
member entity reference: Transcription initiation factor TFIID subunit 4
member entity reference: At3g02160
member entity reference: Transcription initiation factor TFIID subunit 9
member entity reference: TAF (TBP-associated transcription factor) family
member entity reference: TATA box-binding protein-associated factor RNA polymerase I subunit C isoform 1
member entity reference: TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
member entity reference: TATA-box binding protein associated factor 12
member entity reference: TAF9B isoform 2
member entity reference: TATA-box binding protein associated factor 9
member entity reference: AGAP003094-PA
member entity reference: TAF6 isoform 6
member entity reference: RCG43696, isoform CRA_b

uniprot E2RFB9 22
type: UnificationXref
id: E2RFB9
db: uniprot

uniprot Q9VEL2 370
type: UnificationXref
id: Q9VEL2
db: uniprot

uniprot Q99PM3 231
type: UnificationXref
id: Q99PM3
db: uniprot

uniprot F6SMC2 141
type: UnificationXref
id: F6SMC2
db: uniprot

uniprot F4NX01 311
type: UnificationXref
id: F4NX01
db: uniprot

uniprot F7EEK0 317
type: UnificationXref
id: F7EEK0
db: uniprot

uniprot H2QY30 195
type: UnificationXref
id: H2QY30
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F6YKC3 380
organism: Macaca mulatta

RNA
type: RnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s47 a128 417
comment: SPECIES_TYPE=RNA

uniprot O48890 151
type: UnificationXref
id: O48890
db: uniprot

RNA Polymerase II s109 a122 rs2
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

Transcription termination factor 2, mitochondrial
type: ProteinReference
xref: uniprot Q49AM1 197
xref: PTHR15437:SF1
organism: Homo sapiens

uniprot P87121 63
type: UnificationXref
id: P87121
db: uniprot

TFIIA complex
type: Protein
entity reference: TFIIA complex
feature: COMPLEX PARTICIPANT BINDING FEATURE s61 sa39 475
comment: SPECIES_TYPE=PROTEIN

uniprot B1H3B7 239
type: UnificationXref
id: B1H3B7
db: uniprot

General transcription factor IIF subunit 2
type: ProteinReference
xref: uniprot Q01750 292
organism: Rattus norvegicus

PTHR12716:SF8
type: RelationshipXref
id: PTHR12716:SF8
db: PANTHER Family
relationship type: By Homology

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot O96881 119
organism: Drosophila melanogaster

GH11150p
type: ProteinReference
xref: uniprot O96880 279
organism: Drosophila melanogaster

TFIIA complex
type: Protein
entity reference: TFIIA complex
feature: COMPLEX PARTICIPANT BINDING FEATURE s13 sa16 485
comment: SPECIES_TYPE=PROTEIN

uniprot Q9S7R9 109
type: UnificationXref
id: Q9S7R9
db: uniprot

uniprot Q9UNN4 235
type: UnificationXref
id: Q9UNN4
db: uniprot

DNA-directed RNA polymerases II, IV and V subunit 3
type: ProteinReference
xref: PTHR11800:SF2
xref: uniprot Q39211 170
organism: Arabidopsis thaliana

TFIIE
type: ProteinReference
xref: P00666
standard name: Transcription factor IIE
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIE
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: TFIIE Synonym: TF2E,TRANSCRIPTION FACTOR IIE Accession: P00666
member entity reference: AGAP006355-PA
member entity reference: Transcription initiation factor IIE subunit beta
member entity reference: General transcription factor IIE subunit 2
member entity reference: General transcription factor IIE subunit 1
member entity reference: Uncharacterized protein
member entity reference: GTF2E1 isoform 2
member entity reference: General transcription factor II E, polypeptide 1 (Alpha subunit)
member entity reference: GH11150p

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot Q6MG20 263
organism: Rattus norvegicus

RNA Polymerase II s27 sa23 rs1
type: ModificationFeature
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

uniprot A0A1D5R6P6 202
type: UnificationXref
id: A0A1D5R6P6
db: uniprot

TAF1C isoform 5
type: ProteinReference
xref: uniprot H2QBM1 43
xref: PTHR15319:SF1
organism: Pan troglodytes

Uncharacterized protein
type: ProteinReference
xref: uniprot Q5ZKX3 78
organism: Gallus gallus

Transcription initiation factor IIB-2
type: ProteinReference
xref: uniprot Q9SS44 369
organism: Arabidopsis thaliana

Transcription initiation factor TFIID subunit 4
type: ProteinReference
xref: PTHR15138:SF14
xref: uniprot P47825 56
organism: Drosophila melanogaster

uniprot A0A1D5Q6K1 124
type: UnificationXref
id: A0A1D5Q6K1
db: uniprot

uniprot Q00403 338
type: UnificationXref
id: Q00403
db: uniprot

PARTICIPANT STOICHIOMETRY r59 511
type: Stoichiometry
physical entity: TFIIA complex
stoichiometric coefficient: 1.0

ncbitaxon 39947 99
type: UnificationXref
id: 39947
db: ncbitaxon

Macaca mulatta
type: BioSource
xref: ncbitaxon 9544 3

PARTICIPANT STOICHIOMETRY r59 510
type: Stoichiometry
physical entity: TFIIB
stoichiometric coefficient: 1.0

00696
type: UnificationXref
id: MOD:00696
db: mod

uniprot P47825 56
type: UnificationXref
id: P47825
db: uniprot

Transcription initiation factor TFIID subunit 7
type: ProteinReference
xref: uniprot Q2HJG8 73
organism: Bos taurus

uniprot E2R3G8 205
type: UnificationXref
id: E2R3G8
db: uniprot

ncbitaxon 36329 156
type: UnificationXref
id: 36329
db: ncbitaxon

Transcription initiation factor TFIID subunit 7
type: ProteinReference
xref: uniprot O13701 50
organism: Schizosaccharomyces pombe

uniprot Q62880 83
type: UnificationXref
id: Q62880
db: uniprot

ACTIVE 191
type: EntityFeature
comment: Active state

RNA Polymerase II s27 sa23 rs2
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

uniprot H2R4N5 45
type: UnificationXref
id: H2R4N5
db: uniprot

General transcription facter IIA subunit 1 variant 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot A1IIE6 204
organism: Gallus gallus

uniprot Q8R4I4 229
type: UnificationXref
id: Q8R4I4
db: uniprot

uniprot F7F0D8 251
type: UnificationXref
id: F7F0D8
db: uniprot

Transcription initiation factor TFIID subunit 11
type: ProteinReference
xref: uniprot P49906 61
organism: Drosophila melanogaster

Transcription initiation factor TFIID subunit 12
type: ProteinReference
xref: uniprot P49905 60
organism: Drosophila melanogaster

Methanosarcina acetivorans
type: BioSource
xref: ncbitaxon 188937 357

Transcription initiation factor TFIID subunit 11
type: ProteinReference
xref: uniprot Q15544 64
organism: Homo sapiens

uniprot P32774 215
type: UnificationXref
id: P32774
db: uniprot

uniprot Q8ZWS3 359
type: UnificationXref
id: Q8ZWS3
db: uniprot

Transcription initiation factor TFIID subunit 7
type: ProteinReference
xref: uniprot Q15545 65
organism: Homo sapiens

uniprot Q17QQ4 69
type: UnificationXref
id: Q17QQ4
db: uniprot

uniprot Q503H9 222
type: UnificationXref
id: Q503H9
db: uniprot

TFIIA complex
type: Protein
entity reference: TFIIA complex
comment: SPECIES_TYPE=PROTEIN

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot Q7Q7C7 122
organism: Anopheles gambiae

Transcription initiation factor TFIID subunit 9B
type: ProteinReference
xref: uniprot Q9HBM6 104
organism: Homo sapiens

RNA Polymerase II s27 sa23 rs3
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

uniprot H2QW11 323
type: UnificationXref
id: H2QW11
db: uniprot

BRF1 RNA polymerase III transcription initiation factor subunit a
type: ProteinReference
xref: uniprot F1R9S3 308
xref: PTHR11618:SF4
organism: Danio rerio

uniprot E2RGQ0 284
type: UnificationXref
id: E2RGQ0
db: uniprot

uniprot Q8C176 95
type: UnificationXref
id: Q8C176
db: uniprot

uniprot Q7Q8X9 90
type: UnificationXref
id: Q7Q8X9
db: uniprot

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot A6H7G8 247
organism: Bos taurus

TATA box Promoter
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s52 sa33 463
comment: SPECIES_TYPE=GENE

uniprot H9ERZ5 287
type: UnificationXref
id: H9ERZ5
db: uniprot

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot O08950 212
organism: Rattus norvegicus

ncbitaxon 9031 79
type: UnificationXref
id: 9031
db: ncbitaxon

TFIIB
type: Protein
entity reference: TFIIB
feature: COMPLEX PARTICIPANT BINDING FEATURE s62 sa40 477
comment: SPECIES_TYPE=PROTEIN

TATA box-binding protein-like protein 1
type: ProteinReference
xref: uniprot Q9YGV8 386
xref: PTHR10126:SF55
organism: Gallus gallus

uniprot F7CX67 146
type: UnificationXref
id: F7CX67
db: uniprot

Transcription initiation factor IIA subunit 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot O08949 211
organism: Rattus norvegicus

RNA Polymerase II s27 sa23 rs4
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

TAF6 isoform 6
type: ProteinReference
xref: uniprot A0A2I3REX6 5
organism: Pan troglodytes

Pyrobaculum aerophilum
type: BioSource
xref: ncbitaxon 178306 360

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q0DLD3 220
organism: Oryza sativa

Transcription initiation factor TFIID subunit 7
type: ProteinReference
xref: uniprot Q9R1C0 108
organism: Mus musculus

General transcription factor II E, polypeptide 1 (Alpha subunit)
type: ProteinReference
xref: PTHR13097:SF7
xref: uniprot G3V992 276
organism: Rattus norvegicus

PARTICIPANT STOICHIOMETRY r36 502
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

DNA-directed RNA polymerase V subunit 5C
type: ProteinReference
xref: PTHR10535:SF12
xref: uniprot Q9M1H8 185
organism: Arabidopsis thaliana

PARTICIPANT STOICHIOMETRY r36 501
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r36 503
type: Stoichiometry
physical entity: Complex (TBP/TBP-associated factors)
stoichiometric coefficient: 1.0

uniprot F7G0B2 38
type: UnificationXref
id: F7G0B2
db: uniprot

General transcription factor IIF subunit 2
type: ProteinReference
xref: uniprot H9ERZ5 287
organism: Macaca mulatta

TATA box Promoter
type: DnaRegion
comment: SPECIES_TYPE=GENE

uniprot Q7SEH7 226
type: UnificationXref
id: Q7SEH7
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F6PMC9 313
organism: Monodelphis domestica

TATA box-binding protein-like protein 1
type: ProteinReference
xref: PTHR10126:SF55
xref: uniprot Q32LB1 384
organism: Bos taurus

DNA-directed RNA polymerases I, II, and III subunit RPABC2
type: ProteinReference
xref: uniprot O88828 154
xref: PTHR10773:SF12
organism: Rattus norvegicus

STATE_TRANSITION_LEFT__ATP-_GTP-_CTP-_UTP-_transcription_complex-RIGHT__transcription_elongation_complex-_r60
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: STATE TRANSITION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r60 517
participant stoichiometry: PARTICIPANT STOICHIOMETRY r60 520
participant stoichiometry: PARTICIPANT STOICHIOMETRY r60 515
participant stoichiometry: PARTICIPANT STOICHIOMETRY r60 519
participant stoichiometry: PARTICIPANT STOICHIOMETRY r60 518
participant stoichiometry: PARTICIPANT STOICHIOMETRY r60 516
left: GTP
left: UTP
left: transcription complex
left: ATP
left: CTP
interaction type: STATE_TRANSITION
right: transcription elongation complex

TATA box Promoter s18 sa19 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter
stoichiometric coefficient: 1.0

ncbitaxon 7165 13
type: UnificationXref
id: 7165
db: ncbitaxon

TFIIE s50 sa32 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIE
stoichiometric coefficient: 1.0

uniprot Q641W8 223
type: UnificationXref
id: Q641W8
db: uniprot

uniprot O16991 326
type: UnificationXref
id: O16991
db: uniprot

uniprot E2R911 21
type: UnificationXref
id: E2R911
db: uniprot

STATE_TRANSITION
type: RelationshipTypeVocabulary

uniprot H2QSV3 44
type: UnificationXref
id: H2QSV3
db: uniprot

TFIIB
type: Protein
entity reference: TFIIB
comment: SPECIES_TYPE=PROTEIN

uniprot Q3T0Q3 171
type: UnificationXref
id: Q3T0Q3
db: uniprot

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: uniprot O74462 52
organism: Schizosaccharomyces pombe

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: uniprot Q5ZMS1 80
xref: PTHR46469:SF1
organism: Gallus gallus

PTHR10535:SF10
type: RelationshipXref
id: PTHR10535:SF10
db: PANTHER Family
relationship type: By Homology

PTHR10535:SF12
type: RelationshipXref
id: PTHR10535:SF12
db: PANTHER Family
relationship type: By Homology

uniprot Q13889 260
type: UnificationXref
id: Q13889
db: uniprot

DNA-directed RNA polymerase II subunit RPB3
type: ProteinReference
xref: uniprot P19387 159
xref: PTHR11800:SF2
organism: Homo sapiens

GTF2E1 isoform 2
type: ProteinReference
xref: PTHR13097:SF7
xref: uniprot H2QN66 277
organism: Pan troglodytes

uniprot F7GV34 275
type: UnificationXref
id: F7GV34
db: uniprot

uniprot A0A1D5QA17 2
type: UnificationXref
id: A0A1D5QA17
db: uniprot

uniprot P37382 160
type: UnificationXref
id: P37382
db: uniprot

uniprot Q2KJ73 261
type: UnificationXref
id: Q2KJ73
db: uniprot

HETERODIMER_ASSOCIATION_LEFT__TBP-_TBP_associated_factors-RIGHT__Complex__TBP_TBP_associated_factors_-_r36
type: ComplexAssembly
spontaneous: true
conversion direction: LEFT_TO_RIGHT
xref: HETERODIMER ASSOCIATION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r36 503
participant stoichiometry: PARTICIPANT STOICHIOMETRY r36 502
participant stoichiometry: PARTICIPANT STOICHIOMETRY r36 501
left: TBP
left: TBP-associated factors
interaction type: HETERODIMER_ASSOCIATION
right: Complex (TBP/TBP-associated factors)

uniprot Q6NZA9 85
type: UnificationXref
id: Q6NZA9
db: uniprot

TFIIEalpha s3 sa3 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIEalpha
stoichiometric coefficient: 2.0

Transcription initiation factor TFIID subunit 11
type: ProteinReference
xref: uniprot A0A1D5QA17 2
organism: Macaca mulatta

ncbitaxon 9598 6
type: UnificationXref
id: 9598
db: ncbitaxon

uniprot O00268 48
type: UnificationXref
id: O00268
db: uniprot

uniprot Q8TT29 356
type: UnificationXref
id: Q8TT29
db: uniprot

uniprot P29056 330
type: UnificationXref
id: P29056
db: uniprot

uniprot F2Z4J6 309
type: UnificationXref
id: F2Z4J6
db: uniprot

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: uniprot Q6P0T2 86
xref: PTHR46469:SF1
organism: Danio rerio

uniprot E2RPG1 306
type: UnificationXref
id: E2RPG1
db: uniprot

uniprot Q92399 182
type: UnificationXref
id: Q92399
db: uniprot

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot D3ZCP9 271
organism: Rattus norvegicus

uniprot H2Q6S6 194
type: UnificationXref
id: H2Q6S6
db: uniprot

uniprot Q3UAW9 341
type: UnificationXref
id: Q3UAW9
db: uniprot

Caenorhabditis elegans
type: BioSource
xref: ncbitaxon 6239 93

PTHR15138:SF14
type: RelationshipXref
id: PTHR15138:SF14
db: PANTHER Family
relationship type: By Homology

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: PTHR10966:SF5
xref: uniprot H2Q9J2 210
organism: Pan troglodytes

uniprot E2RQ42 130
type: UnificationXref
id: E2RQ42
db: uniprot

uniprot F6STP6 32
type: UnificationXref
id: F6STP6
db: uniprot

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: COMPLEX PARTICIPANT BINDING FEATURE s103 a217 447
feature: RNA Polymerase II s103 a217 rs3
feature: RNA Polymerase II s103 a217 rs4
feature: ACTIVE 191
feature: RNA Polymerase II s103 a217 rs2
feature: RNA Polymerase II s103 a217 rs1
comment: SPECIES_TYPE=PROTEIN

PTHR15138:SF18
type: RelationshipXref
id: PTHR15138:SF18
db: PANTHER Family
relationship type: By Homology

uniprot Q7ZV11 180
type: UnificationXref
id: Q7ZV11
db: uniprot

uniprot Q923G2 183
type: UnificationXref
id: Q923G2
db: uniprot

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s57 sa37 471
comment: SPECIES_TYPE=PROTEIN

PTHR10535:SF15
type: RelationshipXref
id: PTHR10535:SF15
db: PANTHER Family
relationship type: By Homology

General transcription factor IIF subunit 2
type: ProteinReference
xref: PTHR10445:SF0
xref: uniprot Q8R0A0 294
organism: Mus musculus

Uncharacterized protein
type: ProteinReference
xref: uniprot F7HPQ7 40
organism: Macaca mulatta

BRF2 isoform 1
type: ProteinReference
xref: uniprot H2QW11 323
organism: Pan troglodytes

uniprot Q28HF5 169
type: UnificationXref
id: Q28HF5
db: uniprot

TFIIF
type: Protein
entity reference: TFIIF
comment: SPECIES_TYPE=PROTEIN

Uncharacterized protein
type: ProteinReference
xref: uniprot F7HPQ9 41
organism: Macaca mulatta

TFIIA-L3
type: ProteinReference
xref: PTHR12694:SF15
xref: uniprot Q9FIF4 233
organism: Arabidopsis thaliana

TATA box-binding protein-associated factor RNA polymerase I subunit C
type: ProteinReference
xref: uniprot Q15572 66
xref: PTHR15319:SF1
organism: Homo sapiens

CTP
type: SmallMolecule
comment: SPECIES_TYPE=SIMPLE_MOLECULE

uniprot F7F9P9 318
type: UnificationXref
id: F7F9P9
db: uniprot

uniprot F1NHV9 134
type: UnificationXref
id: F1NHV9
db: uniprot

uniprot E2RN76 24
type: UnificationXref
id: E2RN76
db: uniprot

uniprot F7FZ67 37
type: UnificationXref
id: F7FZ67
db: uniprot

uniprot P52655 217
type: UnificationXref
id: P52655
db: uniprot

TATA box-binding protein-like protein 1
type: ProteinReference
xref: uniprot P62340 382
xref: PTHR10126:SF55
organism: Mus musculus

TFIIFalpha
type: Protein
entity reference: TFIIFalpha
comment: SPECIES_TYPE=PROTEIN

uniprot F7BVJ4 250
type: UnificationXref
id: F7BVJ4
db: uniprot

DNA-directed RNA polymerase II subunit RPB3
type: ProteinReference
xref: PTHR11800:SF2
xref: uniprot P16370 158
organism: Saccharomyces cerevisiae

uniprot G5EG49 376
type: UnificationXref
id: G5EG49
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: PTHR12694:SF8
xref: uniprot Q7SG05 227
organism: Neurospora crassa

DNA-directed RNA polymerase II subunit 4
type: ProteinReference
xref: uniprot O48890 151
organism: Arabidopsis thaliana

PTHR10917:SF0
type: RelationshipXref
id: PTHR10917:SF0
db: PANTHER Family
relationship type: By Homology

RNA Polymerase II s26 a132 rs4
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

uniprot Q02939 257
type: UnificationXref
id: Q02939
db: uniprot

PTHR46469:SF1
type: RelationshipXref
id: PTHR46469:SF1
db: PANTHER Family
relationship type: By Homology

ncbitaxon 7668 375
type: UnificationXref
id: 7668
db: ncbitaxon

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot O74948 213
organism: Schizosaccharomyces pombe

Transcription initiation factor IIA subunit 1
type: ProteinReference
xref: uniprot P52654 216
xref: PTHR12694:SF8
organism: Drosophila melanogaster

Transcription initiation factor IIA subunit 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot P52655 217
organism: Homo sapiens

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: PTHR10966:SF5
xref: uniprot P52657 218
organism: Homo sapiens

transcription complex
type: Complex
component stoichiometry: RNA Polymerase II s103 a217 STOICHIOMETRY ID COMPLEX
component stoichiometry: TATA box Promoter gene s104 a218 STOICHIOMETRY ID COMPLEX
component stoichiometry: Complex TBP associated factors TBP s100 a215 STOICHIOMETRY ID COMPLEX
component: RNA Polymerase II
component: Complex (TBP-associated factors/TBP)
component: TATA box Promoter gene
feature: COMPLEX BINDING FEATURE s102 csa13 448
feature: COMPLEX BINDING FEATURE s102 csa13 446
feature: COMPLEX BINDING FEATURE s102 csa13 444

uniprot P23255 54
type: UnificationXref
id: P23255
db: uniprot

uniprot Q05B56 258
type: UnificationXref
id: Q05B56
db: uniprot

ncbitaxon 69014 335
type: UnificationXref
id: 69014
db: ncbitaxon

uniprot H2QB71 149
type: UnificationXref
id: H2QB71
db: uniprot

General transcription factor IIE subunit 1
type: ProteinReference
xref: PTHR13097:SF7
xref: uniprot P29083 280
organism: Homo sapiens

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot P29084 281
organism: Homo sapiens

TBP associated factors s14 sa17 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: PTHR46338:SF1
xref: uniprot O94706 53
organism: Schizosaccharomyces pombe

RNA Polymerase II s26 a132 rs3
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

Transcription initiation factor IIF subunit beta
type: ProteinReference
xref: uniprot O94424 288
organism: Schizosaccharomyces pombe

uniprot F7HPQ9 41
type: UnificationXref
id: F7HPQ9
db: uniprot

RCG49239
type: ProteinReference
xref: uniprot B0BN78 16
organism: Rattus norvegicus

uniprot H2PYH5 42
type: UnificationXref
id: H2PYH5
db: uniprot

General transcription and DNA repair factor IIH subunit tfb2
type: ProteinReference
xref: uniprot P87303 256
organism: Schizosaccharomyces pombe

Transcription initiation factor IIB 4
type: ProteinReference
xref: uniprot Q9HR45 365
organism: Halobacterium salinarum

Branchiostoma floridae
type: BioSource
xref: ncbitaxon 7739 304

Uncharacterized protein
type: ProteinReference
xref: uniprot W4Y5K3 374
organism: Strongylocentrotus purpuratus

TBP associated factors s6 sa2 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

uniprot Q568H8 172
type: UnificationXref
id: Q568H8
db: uniprot

uniprot F6QZ41 285
type: UnificationXref
id: F6QZ41
db: uniprot

Transcription initiation factor IIB 2
type: ProteinReference
xref: uniprot P58109 334
organism: Thermococcus kodakaraensis

uniprot F2Z4J4 137
type: UnificationXref
id: F2Z4J4
db: uniprot

ISS
type: EvidenceCodeVocabulary
xref: eco ECO:0000250 10

uniprot F6PMC9 313
type: UnificationXref
id: F6PMC9
db: uniprot

RNA Polymerase II s26 a132 rs2
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

ADP
type: SmallMolecule
comment: SPECIES_TYPE=SIMPLE_MOLECULE

uniprot Q9SS44 369
type: UnificationXref
id: Q9SS44
db: uniprot

uniprot P58109 334
type: UnificationXref
id: P58109
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot A0A3Q1MS65 7
organism: Bos taurus

RNA Polymerase II
type: ProteinReference
xref: P00660
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.RNA Polymerase II
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: RNA Polymerase II Synonym: Synonym not specified Accession: P00660
member entity reference: Uncharacterized protein
member entity reference: DNA-directed RNA polymerase II subunit RPB3
member entity reference: DNA-directed RNA polymerases I, II, and III subunit RPABC3
member entity reference: POLR2E isoform 1
member entity reference: Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3
member entity reference: RNA polymerase II subunit F
member entity reference: GH07456p
member entity reference: DNA-directed RNA polymerases I, II, and III subunit RPABC2
member entity reference: AGAP010064-PA
member entity reference: POLR2F isoform 2
member entity reference: DNA-directed RNA polymerases II, IV and V subunit 3
member entity reference: RNA polymerase II subunit C
member entity reference: Polymerase (RNA) II (DNA directed) polypeptide F
member entity reference: RNA polymerase II subunit E
member entity reference: DNA-directed RNA polymerases I, II, and III subunit RPABC1
member entity reference: DNA-directed RNA polymerase subunit 5-like protein 1
member entity reference: DNA-directed RNA polymerase II 16 kDa subunit,putative
member entity reference: DNA-directed RNA polymerase II polypeptide
member entity reference: AGAP010321-PA
member entity reference: DNA binding / DNA-directed RNA polymerase
member entity reference: Polymerase (RNA) II (DNA directed) polypeptide C
member entity reference: RE34924p
member entity reference: DNA-directed RNA polymerase II subunit 4
member entity reference: DNA-directed RNA polymerase V subunit 5A
member entity reference: DNA-directed RNA polymerase V subunit 5C
member entity reference: DNA-directed RNA polymerase II subunit rpb4
member entity reference: Polymerase (RNA) II (DNA directed) polypeptide E
member entity reference: POLR2C isoform 1
member entity reference: RNA polymerase common subunit RPB6
member entity reference: DNA-directed RNA polymerases II and IV subunit 5A
member entity reference: DNA-directed RNA polymerases IV and V subunit 5B

uniprot Q5ZMS1 80
type: UnificationXref
id: Q5ZMS1
db: uniprot

RE34924p
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot Q7JZF5 174
organism: Drosophila melanogaster

uniprot Q9HBM6 104
type: UnificationXref
id: Q9HBM6
db: uniprot

BRF1 RNA polymerase III transcription initiation factor subunit b
type: ProteinReference
xref: uniprot Q5TZ89 346
xref: PTHR11618:SF4
organism: Danio rerio

TFIIEbeta
type: Protein
entity reference: TFIIEbeta
feature: COMPLEX PARTICIPANT BINDING FEATURE s2 sa5 487
comment: SPECIES_TYPE=PROTEIN

Monodelphis domestica
type: BioSource
xref: ncbitaxon 13616 30

uniprot Q15361 196
type: UnificationXref
id: Q15361
db: uniprot

ATP
type: SmallMolecule
comment: SPECIES_TYPE=SIMPLE_MOLECULE

ncbitaxon 367110 167
type: UnificationXref
id: 367110
db: ncbitaxon

uniprot Q9EQH4 103
type: UnificationXref
id: Q9EQH4
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F7E5W7 36
organism: Macaca mulatta

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: PTHR46469:SF1
xref: uniprot Q28J24 72
organism: Xenopus tropicalis

uniprot O88828 154
type: UnificationXref
id: O88828
db: uniprot

uniprot O96881 119
type: UnificationXref
id: O96881
db: uniprot

RNA Polymerase II s26 a132 rs1
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

ncbitaxon 10090 82
type: UnificationXref
id: 10090
db: ncbitaxon

uniprot A1IIE6 204
type: UnificationXref
id: A1IIE6
db: uniprot

uniprot O70422 253
type: UnificationXref
id: O70422
db: uniprot

uniprot A8KBY2 300
type: UnificationXref
id: A8KBY2
db: uniprot

uniprot L7N3H9 324
type: UnificationXref
id: L7N3H9
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F6XFN3 193
xref: PTHR15437:SF1
organism: Macaca mulatta

Plant-specific TFIIB-related protein 2
type: ProteinReference
xref: uniprot Q9LIA6 367
organism: Arabidopsis thaliana

uniprot P61218 162
type: UnificationXref
id: P61218
db: uniprot

ncbitaxon 9913 8
type: UnificationXref
id: 9913
db: ncbitaxon

Complex (TBP/TBP-associated factors)
type: Complex
component stoichiometry: TBP s106 sa7 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP associated factors s108 sa8 STOICHIOMETRY ID COMPLEX
component: TBP
component: TBP-associated factors
feature: COMPLEX BINDING FEATURE s107 a125 420
feature: COMPLEX BINDING FEATURE s107 a125 422
feature: COMPLEX PARTICIPANT BINDING FEATURE s107 a125 425

TFIIB s62 sa40 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIB
stoichiometric coefficient: 1.0

uniprot P48512 333
type: UnificationXref
id: P48512
db: uniprot

uniprot Q1PEE4 340
type: UnificationXref
id: Q1PEE4
db: uniprot

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot P29052 328
organism: Drosophila melanogaster

uniprot Q9Y6A4 372
type: UnificationXref
id: Q9Y6A4
db: uniprot

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: PTHR10966:SF0
xref: uniprot Q7QA87 225
organism: Anopheles gambiae

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s8 sa14 481
comment: SPECIES_TYPE=PROTEIN

uniprot O08949 211
type: UnificationXref
id: O08949
db: uniprot

uniprot Q49AM1 197
type: UnificationXref
id: Q49AM1
db: uniprot

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot O13749 325
organism: Schizosaccharomyces pombe

uniprot Q9W5B9 237
type: UnificationXref
id: Q9W5B9
db: uniprot

TBP associated factors s7 sa13 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q503H9 222
organism: Danio rerio

uniprot F7GF94 147
type: UnificationXref
id: F7GF94
db: uniprot

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s7 sa13 479
comment: SPECIES_TYPE=PROTEIN

Transcription initiation factor TFIID subunit 9
type: ProteinReference
xref: uniprot Q27272 71
organism: Drosophila melanogaster

Transcription factor IIIB 70 kDa subunit
type: ProteinReference
xref: uniprot P29056 330
organism: Saccharomyces cerevisiae

TFIIF
type: Protein
entity reference: TFIIF
feature: COMPLEX PARTICIPANT BINDING FEATURE s48 sa31 403
comment: SPECIES_TYPE=PROTEIN

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot P29055 329
organism: Saccharomyces cerevisiae

uniprot Q5TR07 282
type: UnificationXref
id: Q5TR07
db: uniprot

Cilia- and flagella-associated protein 20
type: ProteinReference
xref: uniprot Q9Y6A4 372
organism: Homo sapiens

uniprot K7CNC1 150
type: UnificationXref
id: K7CNC1
db: uniprot

uniprot E1BV97 128
type: UnificationXref
id: E1BV97
db: uniprot

uniprot Q2HJG8 73
type: UnificationXref
id: Q2HJG8
db: uniprot

Brf, isoform A
type: ProteinReference
xref: uniprot Q9VEL2 370
xref: PTHR11618:SF4
organism: Drosophila melanogaster

uniprot Q7QB20 351
type: UnificationXref
id: Q7QB20
db: uniprot

ncbitaxon 9544 3
type: UnificationXref
id: 9544
db: ncbitaxon

uniprot P49847 58
type: UnificationXref
id: P49847
db: uniprot

TFIIA complex s61 sa39 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIA complex
stoichiometric coefficient: 1.0

Transcription factor IIIB 50 kDa subunit
type: ProteinReference
xref: uniprot Q3UAW9 341
organism: Mus musculus

General transcription factor IIE subunit 1
type: ProteinReference
xref: PTHR13097:SF7
xref: uniprot Q9D0D5 283
organism: Mus musculus

uniprot E9GMZ1 307
type: UnificationXref
id: E9GMZ1
db: uniprot

uniprot Q9HSB3 366
type: UnificationXref
id: Q9HSB3
db: uniprot

uniprot F6UTN8 34
type: UnificationXref
id: F6UTN8
db: uniprot

Methanocaldococcus jannaschii
type: BioSource
xref: ncbitaxon 243232 344

TFIIA complex
type: ProteinReference
xref: P00662
standard name: Transcription factor IIA
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIA complex
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: TFIIA Synonym: ALF,GENERAL TRANSCRIPTION FACTOR IIA GAMMA SUBUNIT,GTF2A1-like factor,MGC26254,TFIIA large subunit isoform ALF,TFIIA-alpha/beta-like factor,Transcription factor II A Accession: P00662
member entity reference: Transcription initiation factor IIA small chain homolog
member entity reference: Transcription initiation factor IIA subunit 1
member entity reference: Transcription initiation factor IIA subunit 2
member entity reference: General transcription factor IIA subunit 1
member entity reference: General transcription facter IIA subunit 1 variant 1
member entity reference: General transcription factor 2A subunit 1-like
member entity reference: TFIIA-alpha and beta-like factor
member entity reference: TFIIA-L3
member entity reference: Uncharacterized protein
member entity reference: Transcription initiation factor IIA large subunit
member entity reference: Transcription initiation factor IIA subunit 2-2
member entity reference: At1g07470/F22G5_13

General transcription factor IIE subunit 1
type: ProteinReference
xref: PTHR13097:SF7
xref: uniprot E2R3P2 272
organism: Canis lupus familiaris

uniprot P52654 216
type: UnificationXref
id: P52654
db: uniprot

uniprot Q80ZM7 228
type: UnificationXref
id: Q80ZM7
db: uniprot

uniprot Q9P376 270
type: UnificationXref
id: Q9P376
db: uniprot

Arabidopsis thaliana
type: BioSource
xref: ncbitaxon 3702 28

Complex (TBP-associated factors/TBP)
type: Complex
component stoichiometry: TBP s64 sa42 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP associated factors s63 sa41 STOICHIOMETRY ID COMPLEX
component: TBP
component: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s100 a215 445
feature: COMPLEX BINDING FEATURE s100 a215 442
feature: COMPLEX BINDING FEATURE s100 a215 440

General transcription factor IIH subunit 3
type: ProteinReference
xref: uniprot Q13889 260
organism: Homo sapiens

DNA-directed RNA polymerases II and IV subunit 5A
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot O81098 153
organism: Arabidopsis thaliana

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q6DEQ4 224
organism: Xenopus tropicalis

Cilia and flagella associated protein 20
type: ProteinReference
xref: uniprot F6R525 314
organism: Monodelphis domestica

uniprot H2R032 286
type: UnificationXref
id: H2R032
db: uniprot

Transcription factor IIIB 50 kDa subunit
type: ProteinReference
xref: uniprot Q9HAW0 362
organism: Homo sapiens

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot Q8ZWS3 359
organism: Pyrobaculum aerophilum

uniprot Q7JZF5 174
type: UnificationXref
id: Q7JZF5
db: uniprot

uniprot Q3ZBP7 75
type: UnificationXref
id: Q3ZBP7
db: uniprot

Os01g0510800 protein
type: ProteinReference
xref: uniprot Q8LRG9 98
xref: PTHR10221:SF9
organism: Oryza sativa

PARTICIPANT STOICHIOMETRY r59 509
type: Stoichiometry
physical entity: transcription complex
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r59 508
type: Stoichiometry
physical entity: TFIIH complex
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r59 507
type: Stoichiometry
physical entity: Complex (TATA box Promoter/RNA Polymerase II/ TFIIF/TBP/ TBP-associated factors/TFIIH complex/ TFIIA complex/TFIIB)
stoichiometric coefficient: 1.0

Danio rerio
type: BioSource
xref: ncbitaxon 7955 87

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot Q92759 267
organism: Homo sapiens

uniprot K7D0H2 252
type: UnificationXref
id: K7D0H2
db: uniprot

uniprot Q12004 259
type: UnificationXref
id: Q12004
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: PTHR10445:SF0
xref: uniprot E2RGQ0 284
organism: Canis lupus familiaris

Cilia and flagella associated protein 20
type: ProteinReference
xref: uniprot F7F9P9 318
organism: Ornithorhynchus anatinus

uniprot F6S0M5 29
type: UnificationXref
id: F6S0M5
db: uniprot

Transcription initiation factor TFIID subunit 2
type: ProteinReference
xref: uniprot Q8LPF0 97
organism: Arabidopsis thaliana

TTF2
type: ProteinReference
xref: P00661
standard name: Trascription termination factor RNA polymerase II
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TTF2
comment: ENTITY_REFERENCE_NOTES=Long Name: TRANSCRIPTION TERMINATION FACTOR RNA POLYMERASE II Synonym: HuF2,TRANSCRIPTION TERMINATION FACTOR RNA POLYMERASE II,human factor 2 lodestar protein Accession: P00661
member entity reference: Transcription termination factor 1
member entity reference: Transcription termination factor 1b, mitochondrial
member entity reference: Transcription termination factor 2, mitochondrial
member entity reference: Mitochondrial transcription termination factor 2
member entity reference: Uncharacterized protein
member entity reference: Transcription termination factor 1, mitochondrial
member entity reference: TTF1 isoform 2
member entity reference: Transcription termination factor 1a, mitochondrial

TATA box Promoter
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s18 sa19 457
comment: SPECIES_TYPE=GENE

ncbitaxon 7227 57
type: UnificationXref
id: 7227
db: ncbitaxon

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s106 sa7 421
comment: SPECIES_TYPE=PROTEIN

uniprot P62915 336
type: UnificationXref
id: P62915
db: uniprot

Transcription initiation factor TFIID subunit 9
type: ProteinReference
xref: uniprot Q17QQ4 69
organism: Bos taurus

transcription new RNA complex
type: Complex
component stoichiometry: RNA s47 a128 STOICHIOMETRY ID COMPLEX
component stoichiometry: TATA box Promoter gene termination s114 a126 STOICHIOMETRY ID COMPLEX
component stoichiometry: RNA Polymerase II s115 a127 STOICHIOMETRY ID COMPLEX
component stoichiometry: TTF2 s116 a225 STOICHIOMETRY ID COMPLEX
component stoichiometry: Complex TBP TBP associated factors s111 a129 STOICHIOMETRY ID COMPLEX
component: TTF2
component: RNA
component: TATA box Promoter gene termination
component: RNA Polymerase II
component: Complex (TBP/TBP-associated factors)
feature: COMPLEX BINDING FEATURE s110 csa15 410
feature: COMPLEX BINDING FEATURE s110 csa15 414
feature: COMPLEX BINDING FEATURE s110 csa15 418
feature: COMPLEX BINDING FEATURE s110 csa15 412
feature: COMPLEX BINDING FEATURE s110 csa15 416

ncbitaxon 178306 360
type: UnificationXref
id: 178306
db: ncbitaxon

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s33 sa25 391
comment: SPECIES_TYPE=PROTEIN

uniprot F2Z4C9 135
type: UnificationXref
id: F2Z4C9
db: uniprot

Cilia- and flagella-associated protein 20
type: ProteinReference
xref: uniprot Q8BTU1 354
organism: Mus musculus

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot G5EG47 118
organism: Caenorhabditis elegans

AGAP006355-PA
type: ProteinReference
xref: uniprot Q5TR07 282
organism: Anopheles gambiae

General Transcription Factor homolog
type: ProteinReference
xref: uniprot G5EG49 376
organism: Caenorhabditis elegans

PARTICIPANT STOICHIOMETRY r54 491
type: Stoichiometry
physical entity: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIA complex)
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r54 492
type: Stoichiometry
physical entity: TFIIB
stoichiometric coefficient: 1.0

TFIIE
type: Protein
entity reference: TFIIE
feature: COMPLEX PARTICIPANT BINDING FEATURE s50 sa32 405
comment: SPECIES_TYPE=PROTEIN

TATA-box binding protein like 1
type: ProteinReference
xref: PTHR10126:SF55
xref: uniprot F6UVN1 379
organism: Ornithorhynchus anatinus

TATA-box binding protein associated factor 2
type: ProteinReference
xref: uniprot F6UTN8 34
organism: Canis lupus familiaris

eco ECO:0000250 10
type: UnificationXref
id: ECO:0000250
db: eco

uniprot Q80UW8 181
type: UnificationXref
id: Q80UW8
db: uniprot

Complex (TBP/TBP-associated factors)
type: Complex
component stoichiometry: TBP associated factors s112 sa10 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP s113 sa9 STOICHIOMETRY ID COMPLEX
component: TBP-associated factors
component: TBP
feature: COMPLEX BINDING FEATURE s111 a129 406
feature: COMPLEX BINDING FEATURE s111 a129 408
feature: COMPLEX PARTICIPANT BINDING FEATURE s111 a129 411

eco ECO:0000353 387
type: UnificationXref
id: ECO:0000353
db: eco

TAF7 RNA polymerase II, TATA box-binding protein (TBP)-associated factor
type: ProteinReference
xref: uniprot Q8JHG4 96
organism: Danio rerio

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: uniprot F1MUX7 117
xref: PTHR12716:SF8
organism: Bos taurus

TFIIF
type: Protein
entity reference: TFIIF
feature: COMPLEX PARTICIPANT BINDING FEATURE s25 sa22 433
comment: SPECIES_TYPE=PROTEIN

Uncharacterized protein
type: ProteinReference
xref: uniprot F7F0J5 381
xref: PTHR10126:SF55
organism: Monodelphis domestica

Meiosis I arrest, isoform A
type: ProteinReference
xref: uniprot Q9VND0 113
organism: Drosophila melanogaster

General transcription factor IIB
type: ProteinReference
xref: uniprot H2PZC5 320
organism: Pan troglodytes

uniprot Q9VP40 114
type: UnificationXref
id: Q9VP40
db: uniprot

Transcription factor IIIB 90 kDa subunit
type: ProteinReference
xref: uniprot Q92994 361
xref: PTHR11618:SF4
organism: Homo sapiens

TFIIFbeta
type: Protein
entity reference: TFIIFbeta
comment: SPECIES_TYPE=PROTEIN

TATA box Promoter gene termination
type: DnaRegion
comment: SPECIES_TYPE=GENE

Mitochondrial transcription termination factor 2
type: ProteinReference
xref: PTHR15437:SF1
xref: uniprot H2Q6S6 194
organism: Pan troglodytes

uniprot Q9MAU3 106
type: UnificationXref
id: Q9MAU3
db: uniprot

Rattus norvegicus
type: BioSource
xref: ncbitaxon 10116 17

TFIIF s48 sa31 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIF
stoichiometric coefficient: 1.0

TFIIH complex s58 sa38 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIH complex
stoichiometric coefficient: 1.0

uniprot H2Q9J2 210
type: UnificationXref
id: H2Q9J2
db: uniprot

PARTICIPANT STOICHIOMETRY r54 493
type: Stoichiometry
physical entity: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIB/ TFIIA complex)
stoichiometric coefficient: 1.0

Polymerase (RNA) II (DNA directed) polypeptide C
type: ProteinReference
xref: uniprot Q7ZV11 180
xref: PTHR11800:SF2
organism: Danio rerio

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q80ZM7 228
organism: Mus musculus

TFIIA complex s24 sa21 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIA complex
stoichiometric coefficient: 1.0

Daphnia pulex
type: BioSource
xref: ncbitaxon 6669 133

uniprot Q7RY40 353
type: UnificationXref
id: Q7RY40
db: uniprot

uniprot O81098 153
type: UnificationXref
id: O81098
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC1
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot Q9N5K2 187
organism: Caenorhabditis elegans

TFIIF s54 sa35 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIF
stoichiometric coefficient: 1.0

Probable DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q19826 165
xref: PTHR10917:SF0
organism: Caenorhabditis elegans

Transcription initiation factor TFIID subunit 2
type: ProteinReference
xref: uniprot P87121 63
organism: Schizosaccharomyces pombe

uniprot Q7PJW8 175
type: UnificationXref
id: Q7PJW8
db: uniprot

uniprot A0A1D5REN8 4
type: UnificationXref
id: A0A1D5REN8
db: uniprot

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: uniprot P53040 62
organism: Saccharomyces cerevisiae

TATA-box-binding protein-associated factor 2
type: ProteinReference
xref: uniprot F1LNY6 25
organism: Rattus norvegicus

Cyclin/Brf1-like TBP-binding protein
type: ProteinReference
xref: uniprot Q0WVQ3 339
organism: Arabidopsis thaliana

Complex (TBP/TBP-associated factors)
type: Complex
component stoichiometry: TBP associated factors s6 sa2 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP s5 sa1 STOICHIOMETRY ID COMPLEX
component: TBP
component: TBP-associated factors
feature: COMPLEX BINDING FEATURE s44 a106 438
feature: COMPLEX BINDING FEATURE s44 a106 436

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot F7CP70 274
organism: Monodelphis domestica

ncbitaxon 8364 15
type: UnificationXref
id: 8364
db: ncbitaxon

Cilia and flagella associated protein 20
type: ProteinReference
xref: uniprot E2R3J4 305
organism: Canis lupus familiaris

uniprot Q9PT88 188
type: UnificationXref
id: Q9PT88
db: uniprot

uniprot F1MUX7 117
type: UnificationXref
id: F1MUX7
db: uniprot

HETERODIMER_ASSOCIATION_LEFT__RNA_Polymerase_II-_TFIIF-RIGHT__Complex__TFIIF_RNA_Polymerase_II_-_r55
type: ComplexAssembly
spontaneous: true
conversion direction: LEFT_TO_RIGHT
xref: HETERODIMER ASSOCIATION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r55 490
participant stoichiometry: PARTICIPANT STOICHIOMETRY r55 489
participant stoichiometry: PARTICIPANT STOICHIOMETRY r55 488
left: TFIIF
left: RNA Polymerase II
interaction type: HETERODIMER_ASSOCIATION
right: Complex (TFIIF/RNA Polymerase II)

uniprot Q9HHK5 363
type: UnificationXref
id: Q9HHK5
db: uniprot

PTHR46338:SF7
type: RelationshipXref
id: PTHR46338:SF7
db: PANTHER Family
relationship type: By Homology

uniprot E2RCC0 378
type: UnificationXref
id: E2RCC0
db: uniprot

PTHR46338:SF1
type: RelationshipXref
id: PTHR46338:SF1
db: PANTHER Family
relationship type: By Homology

TATA box-binding protein-like protein 1
type: ProteinReference
xref: uniprot P62380 383
xref: PTHR10126:SF55
organism: Homo sapiens

HETERODIMER_ASSOCIATION_LEFT__TFIIFalpha-_TFIIFbeta-RIGHT__TFIIF-_r32
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: HETERODIMER ASSOCIATION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r32 513
participant stoichiometry: PARTICIPANT STOICHIOMETRY r32 514
participant stoichiometry: PARTICIPANT STOICHIOMETRY r32 512
left: TFIIFalpha
left: TFIIFbeta
interaction type: HETERODIMER_ASSOCIATION
right: TFIIF

RNA polymerase II subunit F
type: ProteinReference
xref: uniprot F7CX67 146
xref: PTHR10773:SF12
organism: Ornithorhynchus anatinus

uniprot E2R5J2 116
type: UnificationXref
id: E2R5J2
db: uniprot

General transcription factor IIF subunit 1
type: ProteinReference
xref: uniprot B1H3B7 239
organism: Xenopus tropicalis

uniprot Q3THK3 243
type: UnificationXref
id: Q3THK3
db: uniprot

TFIIB s42 sa29 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIB
stoichiometric coefficient: 1.0

uniprot Q8VD76 266
type: UnificationXref
id: Q8VD76
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot E2QVZ3 19
organism: Canis lupus familiaris

General transcription factor IIH subunit 3
type: ProteinReference
xref: uniprot Q05B56 258
organism: Bos taurus

uniprot Q9HAW0 362
type: UnificationXref
id: Q9HAW0
db: uniprot

Transcription factor IIIB 60 kDa subunit
type: ProteinReference
xref: uniprot Q9P6R0 368
organism: Schizosaccharomyces pombe

General transcription factor IIH subunit 1
type: ProteinReference
xref: uniprot Q9DBA9 268
organism: Mus musculus

uniprot Q9VNZ3 189
type: UnificationXref
id: Q9VNZ3
db: uniprot

TFIIB
type: Protein
entity reference: TFIIB
feature: COMPLEX PARTICIPANT BINDING FEATURE s19 sa20 459
comment: SPECIES_TYPE=PROTEIN

Cilia- and flagella-associated protein 20
type: ProteinReference
xref: uniprot Q9VKV8 371
organism: Drosophila melanogaster

TATA-box binding protein associated factor 8
type: ProteinReference
xref: uniprot E2RN76 24
xref: PTHR46469:SF1
organism: Canis lupus familiaris

uniprot O74462 52
type: UnificationXref
id: O74462
db: uniprot

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: RNA Polymerase II s115 a127 rs1
feature: COMPLEX PARTICIPANT BINDING FEATURE s115 a127 415
feature: RNA Polymerase II s115 a127 rs4
feature: RNA Polymerase II s115 a127 rs3
feature: RNA Polymerase II s115 a127 rs2
feature: ACTIVE 191
comment: SPECIES_TYPE=PROTEIN

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot F7F0D8 251
organism: Monodelphis domestica

TATA box-binding protein-like protein 1
type: ProteinReference
xref: PTHR10126:SF55
xref: uniprot Q6DIY4 385
organism: Xenopus tropicalis

uniprot Q9USU9 236
type: UnificationXref
id: Q9USU9
db: uniprot

GH07456p
type: ProteinReference
xref: uniprot O97183 157
xref: PTHR11800:SF2
organism: Drosophila melanogaster

General transcription factor IIF subunit 1
type: ProteinReference
xref: uniprot P35269 241
xref: PTHR13011:SF0
organism: Homo sapiens

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot P52434 161
xref: PTHR10917:SF0
organism: Homo sapiens

TFIIH complex
type: Protein
entity reference: TFIIH complex
feature: COMPLEX PARTICIPANT BINDING FEATURE s40 sa28 397
comment: SPECIES_TYPE=PROTEIN

uniprot F4IW19 310
type: UnificationXref
id: F4IW19
db: uniprot

POLR2E isoform 1
type: ProteinReference
xref: uniprot K7CNC1 150
organism: Pan troglodytes

Complex (TFIIEalpha/TFIIEalpha)
type: Complex
component stoichiometry: TFIIEalpha s3 sa3 STOICHIOMETRY ID COMPLEX
component: TFIIEalpha
feature: COMPLEX BINDING FEATURE s43 a113 450

uniprot O74825 152
type: UnificationXref
id: O74825
db: uniprot

Transcription initiation factor IIA subunit 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot Q99PM3 231
organism: Mus musculus

HETERODIMER_ASSOCIATION
type: RelationshipTypeVocabulary

uniprot O96880 279
type: UnificationXref
id: O96880
db: uniprot

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot E2R3G8 205
organism: Canis lupus familiaris

TATA box Promoter gene termination
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s114 a126 413
comment: SPECIES_TYPE=GENE

uniprot Q6DEQ4 224
type: UnificationXref
id: Q6DEQ4
db: uniprot

General transcription factor IIH subunit 3
type: ProteinReference
xref: uniprot Q8VD76 266
organism: Mus musculus

uniprot A0A2I3SS53 246
type: UnificationXref
id: A0A2I3SS53
db: uniprot

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: RNA Polymerase II s53 sa34 rs2
feature: COMPLEX PARTICIPANT BINDING FEATURE s53 sa34 465
feature: RNA Polymerase II s53 sa34 rs3
feature: RNA Polymerase II s53 sa34 rs4
feature: ACTIVE 191
feature: RNA Polymerase II s53 sa34 rs1
comment: SPECIES_TYPE=PROTEIN

uniprot A0A1D5R7P4 238
type: UnificationXref
id: A0A1D5R7P4
db: uniprot

Plant-specific TFIIB-related protein 1
type: ProteinReference
xref: uniprot O23215 327
xref: PTHR11618:SF26
organism: Arabidopsis thaliana

PTHR10773:SF12
type: RelationshipXref
id: PTHR10773:SF12
db: PANTHER Family
relationship type: By Homology

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: PTHR46469:SF1
xref: uniprot A7MAZ4 9
organism: Bos taurus

ncbitaxon 44689 265
type: UnificationXref
id: 44689
db: ncbitaxon

Transcription initiation factor TFIID subunit 12
type: ProteinReference
xref: uniprot Q3T174 74
organism: Bos taurus

General transcription factor IIB
type: ProteinReference
xref: uniprot A0A0R4IRB5 295
organism: Danio rerio

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot F7GF94 147
xref: PTHR10917:SF0
organism: Monodelphis domestica

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q32L01 221
xref: PTHR10966:SF0
organism: Bos taurus

uniprot P60027 255
type: UnificationXref
id: P60027
db: uniprot

uniprot Q16594 68
type: UnificationXref
id: Q16594
db: uniprot

GTF2H3 isoform 1
type: ProteinReference
xref: uniprot K7D0H2 252
organism: Pan troglodytes

Transcription initiation factor IIF subunit beta
type: ProteinReference
xref: uniprot P41896 290
organism: Saccharomyces cerevisiae

uniprot Q9VKV8 371
type: UnificationXref
id: Q9VKV8
db: uniprot

uniprot A7MAZ4 9
type: UnificationXref
id: A7MAZ4
db: uniprot

General transcription factor IIH subunit 1
type: ProteinReference
xref: uniprot A0A0G2JWQ0 245
organism: Rattus norvegicus

uniprot Q24325 70
type: UnificationXref
id: Q24325
db: uniprot

Cilia- and flagella-associated protein 20
type: ProteinReference
xref: uniprot Q6PBJ2 349
organism: Danio rerio

TATA box-binding protein-like protein 1
type: ProteinReference
xref: uniprot A6H914 377
xref: PTHR10126:SF55
organism: Pan troglodytes

DNA-directed RNA polymerases I, II, and III subunit RPABC1
type: ProteinReference
xref: uniprot B0BNE2 127
organism: Rattus norvegicus

TFIIA complex
type: Protein
entity reference: TFIIA complex
feature: COMPLEX PARTICIPANT BINDING FEATURE s24 sa21 461
comment: SPECIES_TYPE=PROTEIN

Transcription initiation factor TFIID subunit 2
type: ProteinReference
xref: uniprot P23255 54
organism: Saccharomyces cerevisiae

TATA-box binding protein associated factor 6
type: ProteinReference
xref: uniprot E2RFB9 22
organism: Canis lupus familiaris

PTHR11618:SF13
type: RelationshipXref
id: PTHR11618:SF13
db: PANTHER Family
relationship type: By Homology

uniprot F7HU28 319
type: UnificationXref
id: F7HU28
db: uniprot

uniprot Q7YTH5 92
type: UnificationXref
id: Q7YTH5
db: uniprot

Complex TBP TBP associated factors s111 a129 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: Complex (TBP/TBP-associated factors)
stoichiometric coefficient: 1.0

AGAP004233-PA
type: ProteinReference
xref: uniprot Q7QB20 351
xref: PTHR11618:SF4
organism: Anopheles gambiae

uniprot A0A3Q1MS65 7
type: UnificationXref
id: A0A3Q1MS65
db: uniprot

Cilia- and flagella-associated protein 20
type: ProteinReference
xref: uniprot Q5ZHP3 347
organism: Gallus gallus

Transcription termination factor 1b, mitochondrial
type: ProteinReference
xref: uniprot B9EJ57 192
organism: Mus musculus

RNA Polymerase II s16 a29 rs4
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

Uncharacterized protein
type: ProteinReference
xref: uniprot F7BXN9 143
organism: Monodelphis domestica

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: COMPLEX PARTICIPANT BINDING FEATURE s109 a122 429
feature: RNA Polymerase II s109 a122 rs1
feature: RNA Polymerase II s109 a122 rs4
feature: RNA Polymerase II s109 a122 rs2
feature: ACTIVE 191
feature: RNA Polymerase II s109 a122 rs3
comment: SPECIES_TYPE=PROTEIN

DNA-directed RNA polymerases I, II, and III subunit RPABC1
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot Q09191 164
organism: Schizosaccharomyces pombe

PARTICIPANT STOICHIOMETRY r60 517
type: Stoichiometry
physical entity: CTP
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r60 518
type: Stoichiometry
physical entity: UTP
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r60 519
type: Stoichiometry
physical entity: transcription complex
stoichiometric coefficient: 1.0

uniprot E2RPD9 129
type: UnificationXref
id: E2RPD9
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot Q7RY40 353
xref: PTHR11618:SF4
organism: Neurospora crassa

uniprot Q6P1X5 88
type: UnificationXref
id: Q6P1X5
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F7HU28 319
organism: Macaca mulatta

PARTICIPANT STOICHIOMETRY r60 515
type: Stoichiometry
physical entity: ATP
stoichiometric coefficient: 1.0

uniprot Q9NEX2 234
type: UnificationXref
id: Q9NEX2
db: uniprot

PARTICIPANT STOICHIOMETRY r60 516
type: Stoichiometry
physical entity: GTP
stoichiometric coefficient: 1.0

Saccharomyces cerevisiae
type: BioSource
xref: ncbitaxon 559292 55

Drosophila melanogaster
type: BioSource
xref: ncbitaxon 7227 57

uniprot Q58192 343
type: UnificationXref
id: Q58192
db: uniprot

General transcription factor IIF subunit 2
type: ProteinReference
xref: PTHR10445:SF0
xref: uniprot F6QZ41 285
organism: Monodelphis domestica

Uncharacterized protein
type: ProteinReference
xref: PTHR10917:SF0
xref: uniprot A0A3Q2TVW3 126
organism: Gallus gallus

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: uniprot P49848 59
organism: Homo sapiens

PARTICIPANT STOICHIOMETRY r60 520
type: Stoichiometry
physical entity: transcription elongation complex
stoichiometric coefficient: 1.0

uniprot Q7S8Z5 178
type: UnificationXref
id: Q7S8Z5
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F4NX01 311
organism: Batrachochytrium dendrobatidis

STATE_TRANSITION_LEFT__Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIA_complex_-_TFIIB-RIGHT__Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIB__TFIIA_complex_-_r54
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: STATE TRANSITION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r54 491
participant stoichiometry: PARTICIPANT STOICHIOMETRY r54 492
participant stoichiometry: PARTICIPANT STOICHIOMETRY r54 493
left: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIA complex)
left: TFIIB
interaction type: STATE_TRANSITION
right: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIB/ TFIIA complex)

TBP s64 sa42 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

Uncharacterized protein
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot F7EVS0 208
organism: Monodelphis domestica

ncbitaxon 9615 20
type: UnificationXref
id: 9615
db: ncbitaxon

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot G3V678 148
xref: PTHR10917:SF0
organism: Rattus norvegicus

Uncharacterized protein
type: ProteinReference
xref: uniprot F7GSG6 39
organism: Macaca mulatta

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: uniprot P49847 58
organism: Drosophila melanogaster

Plasmodium falciparum
type: BioSource
xref: ncbitaxon 36329 156

RNA s47 a128 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA
stoichiometric coefficient: 1.0

uniprot Q5JGN1 345
type: UnificationXref
id: Q5JGN1
db: uniprot

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot P36145 120
organism: Saccharomyces cerevisiae

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
comment: SPECIES_TYPE=PROTEIN

transcription elongation complex
type: Complex
component stoichiometry: Complex TBP TBP associated factors s107 a125 STOICHIOMETRY ID COMPLEX
component stoichiometry: RNA Polymerase II s109 a122 STOICHIOMETRY ID COMPLEX
component stoichiometry: TATA box Promoter gene s28 a121 STOICHIOMETRY ID COMPLEX
component stoichiometry: elongating mRNA s46 a123 STOICHIOMETRY ID COMPLEX
component: elongating mRNA
component: TATA box Promoter gene
component: Complex (TBP/TBP-associated factors)
component: RNA Polymerase II
feature: COMPLEX BINDING FEATURE s105 csa14 424
feature: COMPLEX BINDING FEATURE s105 csa14 428
feature: COMPLEX BINDING FEATURE s105 csa14 426
feature: COMPLEX BINDING FEATURE s105 csa14 430

Thermococcus kodakaraensis
type: BioSource
xref: ncbitaxon 69014 335

uniprot E7FDD7 131
type: UnificationXref
id: E7FDD7
db: uniprot

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
type: ProteinReference
xref: uniprot Q3ZBP7 75
organism: Bos taurus

ncbitaxon 13616 30
type: UnificationXref
id: 13616
db: ncbitaxon

PTHR47227:SF1
type: RelationshipXref
id: PTHR47227:SF1
db: PANTHER Family
relationship type: By Homology

General transcription factor IIH subunit 1
type: ProteinReference
xref: uniprot E2RCX0 248
organism: Canis lupus familiaris

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s108 sa8 423
comment: SPECIES_TYPE=PROTEIN

Complex (TFIIF/RNA Polymerase II)
type: Complex
component stoichiometry: TFIIF s25 sa22 STOICHIOMETRY ID COMPLEX
component stoichiometry: RNA Polymerase II s27 sa23 STOICHIOMETRY ID COMPLEX
component: TFIIF
component: RNA Polymerase II
feature: COMPLEX BINDING FEATURE s60 a148 434
feature: COMPLEX BINDING FEATURE s60 a148 432

RNA Polymerase II s16 a29 rs1
type: ModificationFeature
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

TBP associated factors s63 sa41 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

TFIIH complex
type: ProteinReference
xref: P00664
standard name: Transcription factor IIH
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: TFIIH Synonym: GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1,GTF2H 62-KD SUBUNIT,GTF2H1,TFIIH 62-KD SUBUNIT,TRANSCRIPTION FACTOR IIH 62-KD SUBUNIT Accession: P00664
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIH complex
member entity reference: General transcription and DNA repair factor IIH subunit tfb2
member entity reference: General transcription and DNA repair factor IIH subunit TFB2
member entity reference: General transcription factor IIH subunit 4
member entity reference: General transcription factor IIH subunit 3
member entity reference: General transcription factor IIH subunit 1
member entity reference: Uncharacterized protein
member entity reference: GTF2H3 isoform 1
member entity reference: General transcription and DNA repair factor IIH subunit TFB4
member entity reference: General transcription and DNA repair factor IIH subunit tcf-29
member entity reference: General transcription factor IIH, polypeptide 1, 62kDa

ncbitaxon 7955 87
type: UnificationXref
id: 7955
db: ncbitaxon

uniprot F7HPQ7 40
type: UnificationXref
id: F7HPQ7
db: uniprot

uniprot Q8CHZ9 199
type: UnificationXref
id: Q8CHZ9
db: uniprot

AGAP005731-PA (Fragment)
type: ProteinReference
xref: uniprot A7UTV1 12
organism: Anopheles gambiae

TBP
type: Protein
entity reference: TBP
comment: SPECIES_TYPE=PROTEIN

uniprot P49905 60
type: UnificationXref
id: P49905
db: uniprot

uniprot H2Q908 321
type: UnificationXref
id: H2Q908
db: uniprot

uniprot Q9D3R9 102
type: UnificationXref
id: Q9D3R9
db: uniprot

uniprot Q39211 170
type: UnificationXref
id: Q39211
db: uniprot

DNA-directed RNA polymerase subunit 5-like protein 1
type: ProteinReference
xref: uniprot Q9FJL8 184
xref: PTHR10535:SF15
organism: Arabidopsis thaliana

RNA Polymerase II s115 a127 rs4
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

uniprot Q6PBJ2 349
type: UnificationXref
id: Q6PBJ2
db: uniprot

uniprot P19387 159
type: UnificationXref
id: P19387
db: uniprot

Xenopus tropicalis
type: BioSource
xref: ncbitaxon 8364 15

uniprot P87303 256
type: UnificationXref
id: P87303
db: uniprot

General transcription factor IIE subunit 1
type: ProteinReference
xref: uniprot F7GV34 275
xref: PTHR13097:SF7
organism: Macaca mulatta

TATA box Promoter
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s32 sa24 389
comment: SPECIES_TYPE=GENE

By Homology
type: RelationshipTypeVocabulary

uniprot P32780 254
type: UnificationXref
id: P32780
db: uniprot

General transcription factor IIA subunit 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot F6QGV9 207
organism: Ornithorhynchus anatinus

TATA box Promoter gene termination s114 a126 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter gene termination
stoichiometric coefficient: 1.0

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q568H8 172
xref: PTHR10917:SF0
organism: Danio rerio

uniprot Q19826 165
type: UnificationXref
id: Q19826
db: uniprot

TATA box-binding protein-associated factor RNA polymerase I subunit C isoform 1
type: ProteinReference
xref: uniprot F6UPU0 33
xref: PTHR15319:SF1
organism: Macaca mulatta

uniprot Q3T174 74
type: UnificationXref
id: Q3T174
db: uniprot

uniprot Q32L01 221
type: UnificationXref
id: Q32L01
db: uniprot

uniprot Q8CFK2 355
type: UnificationXref
id: Q8CFK2
db: uniprot

BRF1, RNA polymerase III transcription initiation factor subunit
type: ProteinReference
xref: uniprot H2Q908 321
xref: PTHR11618:SF4
organism: Pan troglodytes

uniprot A0A2I3TKG9 203
type: UnificationXref
id: A0A2I3TKG9
db: uniprot

uniprot Q01750 292
type: UnificationXref
id: Q01750
db: uniprot

TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 28kDa
type: ProteinReference
xref: uniprot H2QSV3 44
organism: Pan troglodytes

RCG43696, isoform CRA_b
type: ProteinReference
xref: PTHR46469:SF1
xref: uniprot D3ZY89 18
organism: Rattus norvegicus

Transcription initiation factor IIA subunit 2-2
type: ProteinReference
xref: uniprot Q9W5B9 237
organism: Drosophila melanogaster

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s113 sa9 407
comment: SPECIES_TYPE=PROTEIN

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: PTHR10221:SF13
xref: uniprot Q9MAU3 106
organism: Arabidopsis thaliana

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot H2QZJ1 278
organism: Pan troglodytes

RNA Polymerase II s115 a127 rs3
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

uniprot O13701 50
type: UnificationXref
id: O13701
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC1
type: ProteinReference
xref: uniprot Q80UW8 181
organism: Mus musculus

TBP associated factors s108 sa8 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

TBP
type: ProteinReference
xref: P00670
standard name: Tata binding protein
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: TBP Synonym: GTF2D,GTF2D1,SCA17,TATA box binding protein,TFIID,spinocerebellar ataxia 17 Accession: P00670
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TBP
member entity reference: TATA box-binding protein-like protein 1
member entity reference: Uncharacterized protein
member entity reference: Os01g0510800 protein
member entity reference: PSMC3 interacting protein
member entity reference: TATA-box binding protein like 1
member entity reference: Transcription initiation factor TFIID subunit 6

uniprot B0BN78 16
type: UnificationXref
id: B0BN78
db: uniprot

uniprot O13749 325
type: UnificationXref
id: O13749
db: uniprot

Transcription initiation factor IIE subunit beta
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot P79011 121
organism: Schizosaccharomyces pombe

RNA Polymerase II s16 a29 rs3
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

Transcription factor IIIB 50 kDa subunit
type: ProteinReference
xref: uniprot F7EEK0 317
organism: Macaca mulatta

General transcription factor 2A subunit 1-like
type: ProteinReference
xref: PTHR12694:SF9
xref: uniprot Q641W8 223
organism: Rattus norvegicus

elongating mRNA s46 a123 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: elongating mRNA
stoichiometric coefficient: 1.0

TFIIF s25 sa22 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIF
stoichiometric coefficient: 1.0

uniprot F7EVS0 208
type: UnificationXref
id: F7EVS0
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC2
type: ProteinReference
xref: uniprot Q24320 168
xref: PTHR10773:SF12
organism: Drosophila melanogaster

Uncharacterized protein
type: ProteinReference
xref: uniprot F1NHV9 134
organism: Gallus gallus

uniprot Q15544 64
type: UnificationXref
id: Q15544
db: uniprot

RNA Polymerase II s16 a29 rs2
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

Polymerase (RNA) II (DNA directed) polypeptide F
type: ProteinReference
xref: uniprot Q6DDA6 173
xref: PTHR10773:SF12
organism: Xenopus tropicalis

Transcription initiation factor TFIID subunit 2
type: ProteinReference
xref: uniprot Q24325 70
organism: Drosophila melanogaster

Uncharacterized protein
type: ProteinReference
xref: uniprot E9GMZ1 307
organism: Daphnia pulex

uniprot F7BXN9 143
type: UnificationXref
id: F7BXN9
db: uniprot

Transcription initiation factor TFIID subunit 7-like
type: ProteinReference
xref: uniprot Q9D3R9 102
organism: Mus musculus

General transcription factor IIH subunit 3
type: ProteinReference
xref: uniprot Q86IB5 264
organism: Dictyostelium discoideum

PTHR11618:SF26
type: RelationshipXref
id: PTHR11618:SF26
db: PANTHER Family
relationship type: By Homology

uniprot Q9YGV8 386
type: UnificationXref
id: Q9YGV8
db: uniprot

Transcription termination factor 1
type: ProteinReference
xref: uniprot Q62187 198
organism: Mus musculus

uniprot Q8LRG9 98
type: UnificationXref
id: Q8LRG9
db: uniprot

uniprot A0A131MCT5 296
type: UnificationXref
id: A0A131MCT5
db: uniprot

Bromodomain transcription factor
type: ProteinReference
xref: PTHR46338:SF10
xref: uniprot Q9LF25 105
organism: Arabidopsis thaliana

uniprot Q7Q0D5 176
type: UnificationXref
id: Q7Q0D5
db: uniprot

STATE TRANSITION LEFT transcription new RNA complex-RIGHT mRNA- TTF2- TATA box Promoter gene termination - RNA Polymerase II- Complex TBP TBP associated factors - re13
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: STATE TRANSITION
participant stoichiometry: PARTICIPANT STOICHIOMETRY re13 527
participant stoichiometry: PARTICIPANT STOICHIOMETRY re13 530
participant stoichiometry: PARTICIPANT STOICHIOMETRY re13 528
participant stoichiometry: PARTICIPANT STOICHIOMETRY re13 526
participant stoichiometry: PARTICIPANT STOICHIOMETRY re13 529
participant stoichiometry: PARTICIPANT STOICHIOMETRY re13 531
left: transcription new RNA complex
display name: STATE_TRANSITION_LEFT__transcription_new_RNA_complex-RIGHT__mRNA-_TTF2-_TATA_box_Promoter______________________________________________gene____________________________________termination_____-_RNA_Polymerase_II-_Complex__TBP_TBP_associated_factors_-_re13
interaction type: STATE_TRANSITION
right: TTF2
right: mRNA
right: RNA Polymerase II
right: Complex (TBP/TBP-associated factors)
right: TATA box Promoter gene termination

Transcription initiation factor TFIID subunit 9
type: ProteinReference
xref: uniprot Q9SYH2 110
organism: Arabidopsis thaliana

PTHR10445:SF0
type: RelationshipXref
id: PTHR10445:SF0
db: PANTHER Family
relationship type: By Homology

uniprot F6SFX7 31
type: UnificationXref
id: F6SFX7
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC2
type: ProteinReference
xref: uniprot P61219 163
xref: PTHR10773:SF12
organism: Mus musculus

uniprot E2RFN3 23
type: UnificationXref
id: E2RFN3
db: uniprot

uniprot F6QGV9 207
type: UnificationXref
id: F6QGV9
db: uniprot

ncbitaxon 9258 140
type: UnificationXref
id: 9258
db: ncbitaxon

Transcription initiation factor TFIID subunit 9
type: ProteinReference
xref: uniprot Q5BKE0 76
organism: Rattus norvegicus

PTHR10221:SF9
type: RelationshipXref
id: PTHR10221:SF9
db: PANTHER Family
relationship type: By Homology

uniprot F7GSG6 39
type: UnificationXref
id: F7GSG6
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC2
type: ProteinReference
xref: uniprot P61218 162
xref: PTHR10773:SF12
organism: Homo sapiens

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot P62915 336
organism: Mus musculus

Transcription factor IIB
type: ProteinReference
xref: uniprot F7BVN4 316
organism: Macaca mulatta

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s17 sa18 455
comment: SPECIES_TYPE=PROTEIN

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot P62916 337
organism: Rattus norvegicus

uniprot G3V678 148
type: UnificationXref
id: G3V678
db: uniprot

Transcription initiation factor TFIID subunit 9B
type: ProteinReference
xref: uniprot Q62880 83
organism: Rattus norvegicus

uniprot F7E5W7 36
type: UnificationXref
id: F7E5W7
db: uniprot

Transcription factor IIIB 70 kDa subunit
type: ProteinReference
xref: uniprot P43072 331
organism: Candida albicans

PARTICIPANT STOICHIOMETRY re13 526
type: Stoichiometry
physical entity: transcription new RNA complex
stoichiometric coefficient: 1.0

Bos taurus
type: BioSource
xref: ncbitaxon 9913 8

Adenylate kinase isoenzyme 6 isoform a
type: ProteinReference
xref: uniprot F7E5B3 35
organism: Macaca mulatta

uniprot O96150 155
type: UnificationXref
id: O96150
db: uniprot

DNA binding / DNA-directed RNA polymerase
type: ProteinReference
xref: uniprot F4J2R9 138
organism: Arabidopsis thaliana

Ornithorhynchus anatinus
type: BioSource
xref: ncbitaxon 9258 140

Uncharacterized protein
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot E7FDD7 131
organism: Danio rerio

TFIIA complex
type: Protein
entity reference: TFIIA complex
feature: COMPLEX PARTICIPANT BINDING FEATURE s39 sa27 395
comment: SPECIES_TYPE=PROTEIN

uniprot F6UPU0 33
type: UnificationXref
id: F6UPU0
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F6S0M5 29
xref: PTHR46469:SF1
organism: Monodelphis domestica

PARTICIPANT STOICHIOMETRY re13 528
type: Stoichiometry
physical entity: TTF2
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY re13 527
type: Stoichiometry
physical entity: mRNA
stoichiometric coefficient: 1.0

PTHR12694:SF15
type: RelationshipXref
id: PTHR12694:SF15
db: PANTHER Family
relationship type: By Homology

PARTICIPANT STOICHIOMETRY re13 529
type: Stoichiometry
physical entity: TATA box Promoter gene termination
stoichiometric coefficient: 1.0

ncbitaxon 559292 55
type: UnificationXref
id: 559292
db: ncbitaxon

uniprot Q9SYZ9 111
type: UnificationXref
id: Q9SYZ9
db: uniprot

PTHR10966:SF5
type: RelationshipXref
id: PTHR10966:SF5
db: PANTHER Family
relationship type: By Homology

TATA-box binding protein associated factor 9
type: ProteinReference
xref: uniprot E2R911 21
organism: Canis lupus familiaris

UTP
type: SmallMolecule
comment: SPECIES_TYPE=SIMPLE_MOLECULE

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q7Q0D5 176
xref: PTHR10917:SF0
organism: Anopheles gambiae

uniprot Q6P0T2 86
type: UnificationXref
id: Q6P0T2
db: uniprot

General transcription factor IIF subunit 2
type: ProteinReference
xref: uniprot H2R032 286
organism: Pan troglodytes

uniprot Q5EA53 244
type: UnificationXref
id: Q5EA53
db: uniprot

RNA Polymerase II s115 a127 rs2
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

Uncharacterized protein
type: ProteinReference
xref: uniprot F7FZ67 37
organism: Monodelphis domestica

uniprot Q28J24 72
type: UnificationXref
id: Q28J24
db: uniprot

PTHR10966:SF2
type: RelationshipXref
id: PTHR10966:SF2
db: PANTHER Family
relationship type: By Homology

PTHR10966:SF0
type: RelationshipXref
id: PTHR10966:SF0
db: PANTHER Family
relationship type: By Homology

Ixodes scapularis
type: BioSource
xref: ncbitaxon 6945 302

Transcription factor IIIB 90 kDa subunit
type: ProteinReference
xref: uniprot Q8CFK2 355
organism: Mus musculus

Transcription initiation factor TFIID subunit 2
type: ProteinReference
xref: uniprot Q6P1X5 88
organism: Homo sapiens

TFIIH complex
type: Protein
entity reference: TFIIH complex
feature: COMPLEX PARTICIPANT BINDING FEATURE s58 sa38 473
comment: SPECIES_TYPE=PROTEIN

TATA box Promoter s9 sa15 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter
stoichiometric coefficient: 1.0

uniprot B0BLT7 14
type: UnificationXref
id: B0BLT7
db: uniprot

Complex (TATA box Promoter/TBP/ TBP-associated factors/TFIIA complex/ TFIIH complex/TFIIB/ RNA Polymerase II/TFIIF/ TFIIE)
type: Complex
component stoichiometry: TATA box Promoter s32 sa24 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIF s48 sa31 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP s33 sa25 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIH complex s40 sa28 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIE s50 sa32 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIA complex s39 sa27 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIB s42 sa29 STOICHIOMETRY ID COMPLEX
component stoichiometry: RNA Polymerase II s45 sa30 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP associated factors s35 sa26 STOICHIOMETRY ID COMPLEX
component: RNA Polymerase II
component: TFIIF
component: TFIIA complex
component: TFIIB
component: TATA box Promoter
component: TBP
component: TBP-associated factors
component: TFIIE
component: TFIIH complex
feature: COMPLEX BINDING FEATURE s77 a176 388
feature: COMPLEX BINDING FEATURE s77 a176 400
feature: COMPLEX BINDING FEATURE s77 a176 390
feature: COMPLEX BINDING FEATURE s77 a176 394
feature: COMPLEX BINDING FEATURE s77 a176 402
feature: COMPLEX BINDING FEATURE s77 a176 396
feature: COMPLEX BINDING FEATURE s77 a176 404
feature: COMPLEX BINDING FEATURE s77 a176 398
feature: COMPLEX BINDING FEATURE s77 a176 392

Spermatocyte arrest
type: ProteinReference
xref: uniprot Q9VP40 114
xref: PTHR46469:SF1
organism: Drosophila melanogaster

uniprot Q9HR45 365
type: UnificationXref
id: Q9HR45
db: uniprot

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot Q58192 343
organism: Methanocaldococcus jannaschii

Canis lupus familiaris
type: BioSource
xref: ncbitaxon 9615 20

RNA Polymerase II s115 a127 rs1
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

General transcription and DNA repair factor IIH subunit TFB4
type: ProteinReference
xref: uniprot Q12004 259
organism: Saccharomyces cerevisiae

uniprot Q6MG20 263
type: UnificationXref
id: Q6MG20
db: uniprot

TATA box Promoter
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s9 sa15 483
comment: SPECIES_TYPE=GENE

RNA Polymerase II s53 sa34 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

uniprot E2R3P2 272
type: UnificationXref
id: E2R3P2
db: uniprot

uniprot Q09191 164
type: UnificationXref
id: Q09191
db: uniprot

uniprot F7BB98 315
type: UnificationXref
id: F7BB98
db: uniprot

Gallus gallus
type: BioSource
xref: ncbitaxon 9031 79

uniprot Q7Q2H6 177
type: UnificationXref
id: Q7Q2H6
db: uniprot

PARTICIPANT STOICHIOMETRY r32 512
type: Stoichiometry
physical entity: TFIIFalpha
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r32 513
type: Stoichiometry
physical entity: TFIIFbeta
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r32 514
type: Stoichiometry
physical entity: TFIIF
stoichiometric coefficient: 1.0

TFIIB
type: Protein
entity reference: TFIIB
feature: COMPLEX PARTICIPANT BINDING FEATURE s42 sa29 399
comment: SPECIES_TYPE=PROTEIN

uniprot Q6DDA6 173
type: UnificationXref
id: Q6DDA6
db: uniprot

Transcription initiation factor TFIID subunit 2
type: ProteinReference
xref: uniprot Q8C176 95
organism: Mus musculus

PTHR12694:SF9
type: RelationshipXref
id: PTHR12694:SF9
db: PANTHER Family
relationship type: By Homology

PTHR12694:SF8
type: RelationshipXref
id: PTHR12694:SF8
db: PANTHER Family
relationship type: By Homology

PTHR12694:SF7
type: RelationshipXref
id: PTHR12694:SF7
db: PANTHER Family
relationship type: By Homology

General transcription and DNA repair factor IIH subunit TFB2
type: ProteinReference
xref: uniprot Q02939 257
organism: Saccharomyces cerevisiae

Complex TBP TBP associated factors s107 a125 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: Complex (TBP/TBP-associated factors)
stoichiometric coefficient: 1.0

uniprot A0A0G2JWQ0 245
type: UnificationXref
id: A0A0G2JWQ0
db: uniprot

uniprot F7E5B3 35
type: UnificationXref
id: F7E5B3
db: uniprot

uniprot Q9N5K2 187
type: UnificationXref
id: Q9N5K2
db: uniprot

uniprot Q8LPF0 97
type: UnificationXref
id: Q8LPF0
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot F7BVJ4 250
organism: Monodelphis domestica

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q92399 182
xref: PTHR10917:SF0
organism: Schizosaccharomyces pombe

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s63 sa41 441
comment: SPECIES_TYPE=PROTEIN

RNA Polymerase II s109 a122 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

TTF1 isoform 2
type: ProteinReference
xref: uniprot H2QY30 195
organism: Pan troglodytes

uniprot Q7QBM3 91
type: UnificationXref
id: Q7QBM3
db: uniprot

TTF2
type: Protein
entity reference: TTF2
feature: COMPLEX PARTICIPANT BINDING FEATURE s116 a225 419
comment: SPECIES_TYPE=PROTEIN

Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIA complex)
type: Complex
component stoichiometry: TBP associated factors s7 sa13 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIA complex s13 sa16 STOICHIOMETRY ID COMPLEX
component stoichiometry: TATA box Promoter s9 sa15 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP s8 sa14 STOICHIOMETRY ID COMPLEX
component: TATA box Promoter
component: TFIIA complex
component: TBP-associated factors
component: TBP
feature: COMPLEX BINDING FEATURE s55 a141 478
feature: COMPLEX BINDING FEATURE s55 a141 484
feature: COMPLEX BINDING FEATURE s55 a141 480
feature: COMPLEX BINDING FEATURE s55 a141 482

uniprot P62916 337
type: UnificationXref
id: P62916
db: uniprot

TAF9B isoform 2
type: ProteinReference
xref: uniprot H2R4N5 45
organism: Pan troglodytes

Transcription factor IIIB 50 kDa subunit
type: ProteinReference
xref: uniprot A8KBY2 300
xref: PTHR11618:SF5
organism: Danio rerio

POLR2C isoform 1
type: ProteinReference
xref: uniprot H2QB71 149
xref: PTHR11800:SF2
organism: Pan troglodytes

PTHR10535:SF2
type: RelationshipXref
id: PTHR10535:SF2
db: PANTHER Family
relationship type: By Homology

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: RNA Polymerase II s26 a132 rs4
feature: RNA Polymerase II s26 a132 rs2
feature: RNA Polymerase II s26 a132 rs3
feature: ACTIVE 191
feature: RNA Polymerase II s26 a132 rs1
comment: SPECIES_TYPE=PROTEIN

PTHR13097:SF7
type: RelationshipXref
id: PTHR13097:SF7
db: PANTHER Family
relationship type: By Homology

PTHR10535:SF0
type: RelationshipXref
id: PTHR10535:SF0
db: PANTHER Family
relationship type: By Homology

uniprot O94424 288
type: UnificationXref
id: O94424
db: uniprot

uniprot O94706 53
type: UnificationXref
id: O94706
db: uniprot

RNA Polymerase II s45 sa30 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

General transcription factor IIE subunit 2
type: ProteinReference
xref: PTHR12716:SF8
xref: uniprot Q9D902 123
organism: Mus musculus

TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 150kDa
type: ProteinReference
xref: uniprot H2R9Q1 46
organism: Pan troglodytes

uniprot O08950 212
type: UnificationXref
id: O08950
db: uniprot

PARTICIPANT STOICHIOMETRY re13 531
type: Stoichiometry
physical entity: Complex (TBP/TBP-associated factors)
stoichiometric coefficient: 1.0

uniprot F1MII0 206
type: UnificationXref
id: F1MII0
db: uniprot

PARTICIPANT STOICHIOMETRY re13 530
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

uniprot Q7SG05 227
type: UnificationXref
id: Q7SG05
db: uniprot

At3g02160
type: ProteinReference
xref: PTHR46338:SF7
xref: uniprot Q9S7R9 109
organism: Arabidopsis thaliana

TFIIFbeta
type: ProteinReference
xref: P00667
standard name: Transcription factor IIF, beta
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_NOTES=Long Name: TFIIFbeta Synonym: BETA SUBUNIT,RAP30,TF2F2,TFIIF BETA,TRANSCRIPTION FACTOR IIF Accession: P00667
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIF_beta_
member entity reference: Transcription initiation factor IIF subunit beta
member entity reference: General transcription factor IIF subunit 2
member entity reference: Uncharacterized protein

uniprot Q5TZ89 346
type: UnificationXref
id: Q5TZ89
db: uniprot

uniprot Q9D902 123
type: UnificationXref
id: Q9D902
db: uniprot

Transcription initiation factor IIB
type: ProteinReference
xref: PTHR11618:SF13
xref: uniprot V5IMU9 373
organism: Neurospora crassa

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot Q8TT29 356
organism: Methanosarcina acetivorans

mRNA
type: RnaRegion
comment: SPECIES_TYPE=RNA

AGAP009680-PA
type: ProteinReference
xref: uniprot Q7Q1Q4 350
organism: Anopheles gambiae

AGAP010064-PA
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot Q7PJW8 175
organism: Anopheles gambiae

Uncharacterized protein
type: ProteinReference
xref: uniprot A0A1D5R6P6 202
organism: Macaca mulatta

Transcription initiation factor IIB 3
type: ProteinReference
xref: uniprot Q9HHK5 363
organism: Halobacterium salinarum

Uncharacterized protein
type: ProteinReference
xref: uniprot A0A1D5Q9P6 201
organism: Macaca mulatta

Transcription initiation factor TFIID subunit 11
type: ProteinReference
xref: uniprot Q99JX1 101
organism: Mus musculus

Oryza sativa
type: BioSource
xref: ncbitaxon 39947 99

uniprot F2Z4H3 136
type: UnificationXref
id: F2Z4H3
db: uniprot

GTF2F1 isoform 2
type: ProteinReference
xref: uniprot H2QF47 240
xref: PTHR13011:SF0
organism: Pan troglodytes

uniprot E2QVZ3 19
type: UnificationXref
id: E2QVZ3
db: uniprot

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: PTHR46469:SF1
xref: uniprot Q9VWY6 115
organism: Drosophila melanogaster

uniprot H2R9Q1 46
type: UnificationXref
id: H2R9Q1
db: uniprot

TFIIEbeta s2 sa5 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIEbeta
stoichiometric coefficient: 2.0

General transcription and DNA repair factor IIH subunit tcf-29
type: ProteinReference
xref: uniprot Q9P5N7 269
organism: Neurospora crassa

HETERODIMER ASSOCIATION LEFT TFIIH complex- Complex TBP associated factors TBP TATA box Promoter TFIIB TFIIA complex - TFIIE- Complex TFIIF RNA Polymerase II -RIGHT Complex TATA box Promoter TBP TBP associated factors TFIIA complex TFIIH complex TFIIB RNA Polymerase II TFIIF TFIIE - r57
type: ComplexAssembly
spontaneous: true
conversion direction: LEFT_TO_RIGHT
xref: HETERODIMER ASSOCIATION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r57 534
participant stoichiometry: PARTICIPANT STOICHIOMETRY r57 535
participant stoichiometry: PARTICIPANT STOICHIOMETRY r57 532
participant stoichiometry: PARTICIPANT STOICHIOMETRY r57 536
participant stoichiometry: PARTICIPANT STOICHIOMETRY r57 533
left: TFIIE
left: TFIIH complex
left: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIB/ TFIIA complex)
left: Complex (TFIIF/RNA Polymerase II)
display name: HETERODIMER_ASSOCIATION_LEFT__TFIIH_complex-_Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIB__TFIIA_complex_-_TFIIE-_Complex__TFIIF_RNA_Polymerase_II_-RIGHT__Complex__TATA_box_Promoter_TBP__TBP_associated_factors_TFIIA_complex__TFIIH_complex_TFIIB__RNA_Polymerase_II_TFIIF__TFIIE_-_r57
interaction type: HETERODIMER_ASSOCIATION
right: Complex (TATA box Promoter/TBP/ TBP-associated factors/TFIIA complex/ TFIIH complex/TFIIB/ RNA Polymerase II/TFIIF/ TFIIE)

Halobacterium salinarum
type: BioSource
xref: ncbitaxon 64091 364

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot Q8W0W3 358
organism: Oryza sativa

uniprot Q9LIA6 367
type: UnificationXref
id: Q9LIA6
db: uniprot

Transcription initiation factor TFIID subunit 11
type: ProteinReference
xref: uniprot Q5U1X0 77
organism: Rattus norvegicus

Anopheles gambiae
type: BioSource
xref: ncbitaxon 7165 13

ncbitaxon 6669 133
type: UnificationXref
id: 6669
db: ncbitaxon

At1g07470/F22G5_13
type: ProteinReference
xref: uniprot Q93VP4 230
xref: PTHR12694:SF8
organism: Arabidopsis thaliana

Transcription termination factor 1a, mitochondrial
type: ProteinReference
xref: uniprot Q8CHZ9 199
organism: Mus musculus

TATA-box-binding protein-associated factor 6
type: ProteinReference
xref: uniprot F6STP6 32
organism: Xenopus tropicalis

uniprot P16370 158
type: UnificationXref
id: P16370
db: uniprot

PTHR10221:SF13
type: RelationshipXref
id: PTHR10221:SF13
db: PANTHER Family
relationship type: By Homology

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: RNA Polymerase II s27 sa23 rs3
feature: COMPLEX PARTICIPANT BINDING FEATURE s27 sa23 435
feature: RNA Polymerase II s27 sa23 rs1
feature: RNA Polymerase II s27 sa23 rs4
feature: RNA Polymerase II s27 sa23 rs2
comment: SPECIES_TYPE=PROTEIN

TTF2 s116 a225 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TTF2
stoichiometric coefficient: 1.0

uniprot Q8R0A0 294
type: UnificationXref
id: Q8R0A0
db: uniprot

ncbitaxon 188937 357
type: UnificationXref
id: 188937
db: ncbitaxon

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot Q7SEH7 226
xref: PTHR10966:SF0
organism: Neurospora crassa

uniprot A6H7G8 247
type: UnificationXref
id: A6H7G8
db: uniprot

IPI
type: EvidenceCodeVocabulary
xref: eco ECO:0000353 387

uniprot F4J2R9 138
type: UnificationXref
id: F4J2R9
db: uniprot

ncbitaxon 7739 304
type: UnificationXref
id: 7739
db: ncbitaxon

RNA Polymerase II s115 a127 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: RNA Polymerase II
stoichiometric coefficient: 1.0

uniprot Q32LB1 384
type: UnificationXref
id: Q32LB1
db: uniprot

DNA-directed RNA polymerase II subunit rpb4
type: ProteinReference
xref: uniprot O74825 152
organism: Schizosaccharomyces pombe

Transcription initiation factor TFIID subunit 6b
type: ProteinReference
xref: uniprot F4HVA6 27
organism: Arabidopsis thaliana

uniprot E9G252 132
type: UnificationXref
id: E9G252
db: uniprot

CFAP20 isoform 1
type: ProteinReference
xref: uniprot H2QB82 322
organism: Pan troglodytes

P00661
type: UnificationXref
id: P00661
db: PANTHER Pathway Component

Uncharacterized protein
type: ProteinReference
xref: uniprot A0A1D5Q6K1 124
xref: PTHR10917:SF0
organism: Macaca mulatta

P00660
type: UnificationXref
id: P00660
db: PANTHER Pathway Component

uniprot H2QF47 240
type: UnificationXref
id: H2QF47
db: uniprot

eco ECO:0000316 219
type: UnificationXref
id: ECO:0000316
db: eco

P00663
type: UnificationXref
id: P00663
db: PANTHER Pathway Component

uniprot F1LNY6 25
type: UnificationXref
id: F1LNY6
db: uniprot

P00662
type: UnificationXref
id: P00662
db: PANTHER Pathway Component

TFIIH complex
type: Protein
entity reference: TFIIH complex
comment: SPECIES_TYPE=PROTEIN

uniprot Q9LF25 105
type: UnificationXref
id: Q9LF25
db: uniprot

uniprot H2QB82 322
type: UnificationXref
id: H2QB82
db: uniprot

phosphorylated residue
type: SequenceModificationVocabulary
xref: 00696
comment: DATA_SOURCE=CellDesigner

uniprot Q9ZVB9 190
type: UnificationXref
id: Q9ZVB9
db: uniprot

uniprot O23215 327
type: UnificationXref
id: O23215
db: uniprot

TFIIA complex s39 sa27 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIA complex
stoichiometric coefficient: 1.0

Transcription initiation factor TFIID subunit 9
type: ProteinReference
xref: uniprot Q16594 68
organism: Homo sapiens

BRF (Transcription factor) homolog
type: ProteinReference
xref: uniprot A0A131MCT5 296
organism: Caenorhabditis elegans

P00658
type: UnificationXref
id: P00658
db: PANTHER Pathway Component

P00659
type: UnificationXref
id: P00659
db: PANTHER Pathway Component

Cilia- and flagella-associated protein 20
type: ProteinReference
xref: uniprot Q6B857 348
organism: Bos taurus

uniprot F6UVN1 379
type: UnificationXref
id: F6UVN1
db: uniprot

TATA-box-binding protein-associated factor 12
type: ProteinReference
xref: uniprot B0BLT7 14
organism: Xenopus tropicalis

uniprot V5IMU9 373
type: UnificationXref
id: V5IMU9
db: uniprot

Schizosaccharomyces pombe
type: BioSource
xref: ncbitaxon 284812 51

ncbitaxon 243232 344
type: UnificationXref
id: 243232
db: ncbitaxon

uniprot P36145 120
type: UnificationXref
id: P36145
db: uniprot

P00670
type: UnificationXref
id: P00670
db: PANTHER Pathway Component

RNA polymerase common subunit RPB6
type: ProteinReference
xref: uniprot Q9PT88 188
xref: PTHR10773:SF12
organism: Gallus gallus

uniprot Q62187 198
type: UnificationXref
id: Q62187
db: uniprot

uniprot P43072 331
type: UnificationXref
id: P43072
db: uniprot

uniprot Q9VWY6 115
type: UnificationXref
id: Q9VWY6
db: uniprot

P00667
type: UnificationXref
id: P00667
db: PANTHER Pathway Component

P00666
type: UnificationXref
id: P00666
db: PANTHER Pathway Component

General transcription factor IIF subunit 1
type: ProteinReference
xref: PTHR13011:SF0
xref: uniprot Q3THK3 243
organism: Mus musculus

P00665
type: UnificationXref
id: P00665
db: PANTHER Pathway Component

P00664
type: UnificationXref
id: P00664
db: PANTHER Pathway Component

uniprot P61219 163
type: UnificationXref
id: P61219
db: uniprot

Transcription initiation factor IIA large subunit
type: ProteinReference
xref: PTHR12694:SF8
xref: uniprot P32773 214
organism: Saccharomyces cerevisiae

Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIB/ TFIIA complex)
type: Complex
component stoichiometry: TFIIA complex s24 sa21 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIB s19 sa20 STOICHIOMETRY ID COMPLEX
component stoichiometry: TATA box Promoter s18 sa19 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP associated factors s14 sa17 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP s17 sa18 STOICHIOMETRY ID COMPLEX
component: TATA box Promoter
component: TBP
component: TFIIA complex
component: TFIIB
component: TBP-associated factors
feature: COMPLEX BINDING FEATURE s59 a147 458
feature: COMPLEX BINDING FEATURE s59 a147 460
feature: COMPLEX BINDING FEATURE s59 a147 456
feature: COMPLEX BINDING FEATURE s59 a147 452
feature: COMPLEX BINDING FEATURE s59 a147 454

P00669
type: UnificationXref
id: P00669
db: PANTHER Pathway Component

Transcription initiation factor IIA subunit 2
type: ProteinReference
xref: uniprot P32774 215
organism: Saccharomyces cerevisiae

P00668
type: UnificationXref
id: P00668
db: PANTHER Pathway Component

Batrachochytrium dendrobatidis
type: BioSource
xref: ncbitaxon 684364 312

Transcription initiation factor TFIID subunit 9B
type: ProteinReference
xref: uniprot Q6NZA9 85
organism: Mus musculus

uniprot A7UTV1 12
type: UnificationXref
id: A7UTV1
db: uniprot

RNA Polymerase II s103 a217 rs2
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

uniprot A0A1L1RN70 297
type: UnificationXref
id: A0A1L1RN70
db: uniprot

AGAP009558-PA
type: ProteinReference
xref: uniprot Q7QG89 352
organism: Anopheles gambiae

Cyclin/Brf1-like TBP-binding protein
type: ProteinReference
xref: uniprot F4IW19 310
organism: Arabidopsis thaliana

uniprot P52657 218
type: UnificationXref
id: P52657
db: uniprot

General transcription factor IIF subunit 2
type: ProteinReference
xref: uniprot Q2T9L9 293
organism: Bos taurus

TBP s33 sa25 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

uniprot P52434 161
type: UnificationXref
id: P52434
db: uniprot

General transcription factor IIA subunit 1
type: ProteinReference
xref: PTHR12694:SF7
xref: uniprot F1MII0 206
organism: Bos taurus

Complex TBP associated factors TBP s100 a215 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: Complex (TBP-associated factors/TBP)
stoichiometric coefficient: 1.0

uniprot Q8VE65 100
type: UnificationXref
id: Q8VE65
db: uniprot

uniprot G5EG47 118
type: UnificationXref
id: G5EG47
db: uniprot

Uncharacterized protein
type: ProteinReference
xref: uniprot C3ZB94 303
organism: Branchiostoma floridae

RNA polymerase II subunit E
type: ProteinReference
xref: uniprot F2Z4J4 137
organism: Bos taurus

General transcription factor IIF subunit 1
type: ProteinReference
xref: PTHR13011:SF0
xref: uniprot Q5EA53 244
organism: Bos taurus

uniprot C3ZB94 303
type: UnificationXref
id: C3ZB94
db: uniprot

General transcription factor IIH subunit 1
type: ProteinReference
xref: uniprot P32780 254
organism: Homo sapiens

uniprot A0A0R4IRB5 295
type: UnificationXref
id: A0A0R4IRB5
db: uniprot

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot F2Z4J6 309
organism: Bos taurus

AGAP010321-PA
type: ProteinReference
xref: PTHR11800:SF2
xref: uniprot Q7Q2H6 177
organism: Anopheles gambiae

uniprot H2QN66 277
type: UnificationXref
id: H2QN66
db: uniprot

uniprot A0A1D5Q9P6 201
type: UnificationXref
id: A0A1D5Q9P6
db: uniprot

uniprot Q86IB5 264
type: UnificationXref
id: Q86IB5
db: uniprot

Homo sapiens
type: BioSource
xref: ncbitaxon 9606 49

RNA Polymerase II s103 a217 rs1
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

General transcription factor IIF subunit 2
type: ProteinReference
xref: uniprot P13984 289
organism: Homo sapiens

Complex (TATA box Promoter/RNA Polymerase II/ TFIIF/TBP/ TBP-associated factors/TFIIH complex/ TFIIA complex/TFIIB)
type: Complex
component stoichiometry: TFIIB s62 sa40 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP s56 sa36 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIF s54 sa35 STOICHIOMETRY ID COMPLEX
component stoichiometry: TBP associated factors s57 sa37 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIA complex s61 sa39 STOICHIOMETRY ID COMPLEX
component stoichiometry: RNA Polymerase II s53 sa34 STOICHIOMETRY ID COMPLEX
component stoichiometry: TATA box Promoter s52 sa33 STOICHIOMETRY ID COMPLEX
component stoichiometry: TFIIH complex s58 sa38 STOICHIOMETRY ID COMPLEX
component: TBP-associated factors
component: TATA box Promoter
component: TBP
component: RNA Polymerase II
component: TFIIA complex
component: TFIIF
component: TFIIB
component: TFIIH complex
feature: COMPLEX BINDING FEATURE s91 a200 470
feature: COMPLEX BINDING FEATURE s91 a200 462
feature: COMPLEX BINDING FEATURE s91 a200 472
feature: COMPLEX BINDING FEATURE s91 a200 466
feature: COMPLEX BINDING FEATURE s91 a200 464
feature: COMPLEX BINDING FEATURE s91 a200 468
feature: COMPLEX BINDING FEATURE s91 a200 476
feature: COMPLEX BINDING FEATURE s91 a200 474

uniprot F7CLY1 144
type: UnificationXref
id: F7CLY1
db: uniprot

DNA-directed RNA polymerase II polypeptide
type: ProteinReference
xref: uniprot Q1K5K1 166
xref: PTHR11800:SF2
organism: Neurospora crassa

TFIIFalpha
type: ProteinReference
xref: P00663
standard name: General transcription factor IIF, polypeptide 1, 74-KD
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIF_alpha_
comment: ENTITY_REFERENCE_NOTES=Long Name: General Transcription factor IIF, polypeptide 1, 74-KD Synonym: BTF4,GTF2F1,RAP74,TFIIF ALPHA,TRANSCRIPTION FACTOR IIF Accession: P00663
member entity reference: General transcription factor IIF subunit 1
member entity reference: GTF2F1 isoform 2

uniprot Q5BKE0 76
type: UnificationXref
id: Q5BKE0
db: uniprot

uniprot P41896 290
type: UnificationXref
id: P41896
db: uniprot

uniprot F4HVA6 27
type: UnificationXref
id: F4HVA6
db: uniprot

uniprot E2R3J4 305
type: UnificationXref
id: E2R3J4
db: uniprot

uniprot Q7Q1Q4 350
type: UnificationXref
id: Q7Q1Q4
db: uniprot

Transcription initiation factor IIB 1
type: ProteinReference
xref: uniprot Q5JGN1 345
organism: Thermococcus kodakaraensis

uniprot Q8BTU1 354
type: UnificationXref
id: Q8BTU1
db: uniprot

Complex (TFIIE_beta/TFIIE_beta)
type: Complex
component stoichiometry: TFIIEbeta s2 sa5 STOICHIOMETRY ID COMPLEX
component: TFIIEbeta
feature: COMPLEX BINDING FEATURE s41 a114 486

Strongylocentrotus purpuratus
type: BioSource
xref: ncbitaxon 7668 375

RNA Polymerase II s103 a217 rs4
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

TTF2
type: Protein
entity reference: TTF2
comment: SPECIES_TYPE=PROTEIN

TATA-box binding protein associated factor 11
type: ProteinReference
xref: uniprot E2RFN3 23
organism: Canis lupus familiaris

Uncharacterized protein
type: ProteinReference
xref: PTHR11800:SF2
xref: uniprot E1BV97 128
organism: Gallus gallus

POLR2F isoform 2
type: ProteinReference
xref: uniprot A0A2I3R9X3 125
xref: PTHR10773:SF12
organism: Pan troglodytes

General transcription factor 2B
type: ProteinReference
xref: uniprot L7N3H9 324
organism: Xenopus tropicalis

TBP s56 sa36 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

Transcription initiation factor TFIID subunit 6
type: ProteinReference
xref: uniprot Q62311 81
organism: Mus musculus

General transcription factor IIH, polypeptide 1, 62kDa
type: ProteinReference
xref: uniprot Q2KJ73 261
organism: Bos taurus

HETERODIMER_ASSOCIATION_LEFT__TATA_box_Promoter-_TFIIA_complex-_Complex__TBP_TBP_associated_factors_-RIGHT__Complex__TBP_associated_factors_TBP__TATA_box_Promoter_TFIIA_complex_-_r53
type: ComplexAssembly
spontaneous: true
conversion direction: LEFT_TO_RIGHT
xref: HETERODIMER ASSOCIATION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r53 497
participant stoichiometry: PARTICIPANT STOICHIOMETRY r53 495
participant stoichiometry: PARTICIPANT STOICHIOMETRY r53 494
participant stoichiometry: PARTICIPANT STOICHIOMETRY r53 496
left: TATA box Promoter
left: TFIIA complex
left: Complex (TBP/TBP-associated factors)
interaction type: HETERODIMER_ASSOCIATION
right: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIA complex)

TFIIEbeta
type: ProteinReference
xref: P00659
standard name: Transcription factor IIE, beta
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIE_beta
comment: ENTITY_REFERENCE_NOTES=
member entity reference: Transcription initiation factor IIE subunit beta
member entity reference: General transcription factor IIE subunit 2

General transcription factor IIH subunit 3
type: ProteinReference
xref: uniprot Q561R7 262
organism: Rattus norvegicus

TBP s106 sa7 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP
stoichiometric coefficient: 1.0

uniprot Q15545 65
type: UnificationXref
id: Q15545
db: uniprot

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: PTHR10917:SF0
xref: uniprot F2Z4H3 136
organism: Bos taurus

uniprot F7CP70 274
type: UnificationXref
id: F7CP70
db: uniprot

uniprot F6XFN3 193
type: UnificationXref
id: F6XFN3
db: uniprot

uniprot Q9M1J2 186
type: UnificationXref
id: Q9M1J2
db: uniprot

TFIIH complex s40 sa28 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TFIIH complex
stoichiometric coefficient: 1.0

RNA Polymerase II s103 a217 rs3
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

PARTICIPANT STOICHIOMETRY r58 521
type: Stoichiometry
physical entity: ATP
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r58 522
type: Stoichiometry
physical entity: Complex (TATA box Promoter/TBP/ TBP-associated factors/TFIIA complex/ TFIIH complex/TFIIB/ RNA Polymerase II/TFIIF/ TFIIE)
stoichiometric coefficient: 1.0

RNA Polymerase II s45 sa30 rs2
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

PARTICIPANT STOICHIOMETRY r58 525
type: Stoichiometry
physical entity: ADP
stoichiometric coefficient: 1.0

TBP associated factors s57 sa37 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TBP-associated factors
stoichiometric coefficient: 1.0

uniprot Q93VP4 230
type: UnificationXref
id: Q93VP4
db: uniprot

PARTICIPANT STOICHIOMETRY r58 523
type: Stoichiometry
physical entity: Complex (TATA box Promoter/RNA Polymerase II/ TFIIF/TBP/ TBP-associated factors/TFIIH complex/ TFIIA complex/TFIIB)
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r58 524
type: Stoichiometry
physical entity: TFIIE
stoichiometric coefficient: 1.0

uniprot H2REF4 47
type: UnificationXref
id: H2REF4
db: uniprot

TFIIEalpha
type: ProteinReference
xref: P00669
standard name: Transcription factor IIE, alpha
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIE_alpha_
comment: ENTITY_REFERENCE_NOTES=
member entity reference: General transcription factor IIE subunit 1
member entity reference: GTF2E1 isoform 2
member entity reference: General Transcription Factor homolog
member entity reference: GH11150p
member entity reference: General transcription factor II E, polypeptide 1 (Alpha subunit)

uniprot Q9P6R0 368
type: UnificationXref
id: Q9P6R0
db: uniprot

BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
type: ProteinReference
xref: PTHR11618:SF4
xref: uniprot F7BB98 315
organism: Xenopus tropicalis

uniprot Q7Q7C7 122
type: UnificationXref
id: Q7Q7C7
db: uniprot

uniprot Q9VND0 113
type: UnificationXref
id: Q9VND0
db: uniprot

GTP
type: SmallMolecule
comment: SPECIES_TYPE=SIMPLE_MOLECULE

PARTICIPANT STOICHIOMETRY r61 504
type: Stoichiometry
physical entity: transcription elongation complex
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r61 506
type: Stoichiometry
physical entity: transcription new RNA complex
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r61 505
type: Stoichiometry
physical entity: TTF2
stoichiometric coefficient: 1.0

Transcription initiation factor IIA small chain homolog
type: ProteinReference
xref: PTHR10966:SF2
xref: uniprot Q9BIB4 232
organism: Caenorhabditis elegans

DNA-directed RNA polymerase II polypeptide
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot Q7S8Z5 178
organism: Neurospora crassa

DNA-directed RNA polymerases I, II, and III subunit RPABC3
type: ProteinReference
xref: uniprot Q923G2 183
xref: PTHR10917:SF0
organism: Mus musculus

RNA Polymerase II s45 sa30 rs3
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

PARTICIPANT STOICHIOMETRY r41 500
type: Stoichiometry
physical entity: TFIIE
stoichiometric coefficient: 1.0

Dictyostelium discoideum
type: BioSource
xref: ncbitaxon 44689 265

HETERODIMER_ASSOCIATION
type: InteractionVocabulary

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s5 sa1 437
comment: SPECIES_TYPE=PROTEIN

ncbitaxon 6945 302
type: UnificationXref
id: 6945
db: ncbitaxon

uniprot Q24320 168
type: UnificationXref
id: Q24320
db: uniprot

TBP
type: Protein
entity reference: TBP
feature: COMPLEX PARTICIPANT BINDING FEATURE s56 sa36 469
comment: SPECIES_TYPE=PROTEIN

uniprot Q4V8D6 342
type: UnificationXref
id: Q4V8D6
db: uniprot

uniprot P32773 214
type: UnificationXref
id: P32773
db: uniprot

PARTICIPANT STOICHIOMETRY r53 497
type: Stoichiometry
physical entity: Complex (TBP-associated factors/TBP/ TATA box Promoter/TFIIA complex)
stoichiometric coefficient: 1.0

PTHR15437:SF1
type: RelationshipXref
id: PTHR15437:SF1
db: PANTHER Family
relationship type: By Homology

General transcription factor IIH subunit 4
type: ProteinReference
xref: uniprot F6Y6M6 249
organism: Macaca mulatta

PARTICIPANT STOICHIOMETRY r53 496
type: Stoichiometry
physical entity: Complex (TBP/TBP-associated factors)
stoichiometric coefficient: 1.0

ncbitaxon 45351 299
type: UnificationXref
id: 45351
db: ncbitaxon

PARTICIPANT STOICHIOMETRY r53 495
type: Stoichiometry
physical entity: TFIIA complex
stoichiometric coefficient: 1.0

PARTICIPANT STOICHIOMETRY r53 494
type: Stoichiometry
physical entity: TATA box Promoter
stoichiometric coefficient: 1.0

uniprot F7CRN2 145
type: UnificationXref
id: F7CRN2
db: uniprot

Transcription initiation factor TFIID subunit 9-like protein
type: ProteinReference
xref: uniprot F6SFX7 31
organism: Macaca mulatta

uniprot Q6DIY4 385
type: UnificationXref
id: Q6DIY4
db: uniprot

uniprot Q6PDZ2 89
type: UnificationXref
id: Q6PDZ2
db: uniprot

uniprot Q9M1H8 185
type: UnificationXref
id: Q9M1H8
db: uniprot

uniprot H2QZJ1 278
type: UnificationXref
id: H2QZJ1
db: uniprot

uniprot Q0WVQ3 339
type: UnificationXref
id: Q0WVQ3
db: uniprot

uniprot W4Y5K3 374
type: UnificationXref
id: W4Y5K3
db: uniprot

TFIIF
type: ProteinReference
xref: P00665
standard name: Transcription factor IIF
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIF
comment: ENTITY_REFERENCE_NOTES=Long Name: TFIIF Synonym: TF2F,TRANSCRIPTION FACTOR IIF Accession: P00665
member entity reference: RNA polymerase II subunit A C-terminal domain phosphatase

PTHR11800:SF2
type: RelationshipXref
id: PTHR11800:SF2
db: PANTHER Family
relationship type: By Homology

uniprot Q15572 66
type: UnificationXref
id: Q15572
db: uniprot

uniprot G3V992 276
type: UnificationXref
id: G3V992
db: uniprot

Nematostella vectensis
type: BioSource
xref: ncbitaxon 45351 299

Transcription initiation factor TFIID subunit 12
type: ProteinReference
xref: uniprot Q8VE65 100
organism: Mus musculus

Transcription initiation factor IIB 6
type: ProteinReference
xref: uniprot Q9HSB3 366
organism: Halobacterium salinarum

RNA polymerase II subunit C
type: ProteinReference
xref: uniprot E2RQ42 130
xref: PTHR11800:SF2
organism: Canis lupus familiaris

uniprot Q5U1X0 77
type: UnificationXref
id: Q5U1X0
db: uniprot

TFIIE
type: Protein
entity reference: TFIIE
comment: SPECIES_TYPE=PROTEIN

PTHR15319:SF1
type: RelationshipXref
id: PTHR15319:SF1
db: PANTHER Family
relationship type: By Homology

uniprot Q16514 67
type: UnificationXref
id: Q16514
db: uniprot

uniprot F6SGR6 139
type: UnificationXref
id: F6SGR6
db: uniprot

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s6 sa2 439
comment: SPECIES_TYPE=PROTEIN

RNA Polymerase II s45 sa30 rs1
type: ModificationFeature
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

TATA box Promoter gene s28 a121 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter gene
stoichiometric coefficient: 1.0

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: uniprot Q9EQH4 103
xref: PTHR46469:SF1
organism: Mus musculus

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: RNA Polymerase II s16 a29 rs1
feature: RNA Polymerase II s16 a29 rs3
feature: RNA Polymerase II s16 a29 rs2
feature: RNA Polymerase II s16 a29 rs4
comment: SPECIES_TYPE=PROTEIN

uniprot P29083 280
type: UnificationXref
id: P29083
db: uniprot

uniprot E2RCX0 248
type: UnificationXref
id: E2RCX0
db: uniprot

Transcription initiation factor TFIID subunit 12
type: ProteinReference
xref: uniprot Q16514 67
organism: Homo sapiens

TATA box Promoter s32 sa24 STOICHIOMETRY ID COMPLEX
type: Stoichiometry
physical entity: TATA box Promoter
stoichiometric coefficient: 1.0

TATA box Promoter gene
type: DnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s28 a121 427
comment: SPECIES_TYPE=GENE

uniprot O97183 157
type: UnificationXref
id: O97183
db: uniprot

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: PTHR46338:SF1
xref: uniprot Q9SYZ9 111
organism: Arabidopsis thaliana

uniprot Q9D0D5 283
type: UnificationXref
id: Q9D0D5
db: uniprot

Transcription initiation factor IIB-1
type: ProteinReference
xref: uniprot P48512 333
organism: Arabidopsis thaliana

HETERODIMER_ASSOCIATION_LEFT__Complex__TFIIE_beta_TFIIE_beta_-_Complex__TFIIEalpha_TFIIEalpha_-RIGHT__TFIIE-_r41
type: ComplexAssembly
spontaneous: false
conversion direction: LEFT_TO_RIGHT
xref: HETERODIMER ASSOCIATION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r41 498
participant stoichiometry: PARTICIPANT STOICHIOMETRY r41 500
participant stoichiometry: PARTICIPANT STOICHIOMETRY r41 499
left: Complex (TFIIEalpha/TFIIEalpha)
left: Complex (TFIIE_beta/TFIIE_beta)
interaction type: HETERODIMER_ASSOCIATION
right: TFIIE

Transcription initiation factor TFIID subunit 8
type: ProteinReference
xref: uniprot Q7Z7C8 94
xref: PTHR46469:SF1
organism: Homo sapiens

uniprot F6VRF4 142
type: UnificationXref
id: F6VRF4
db: uniprot

TFIIB
type: ProteinReference
xref: P00668
standard name: Transcription factor IIB
comment: ENTITY_REFERENCE_NOTES=Long Name: TFIIB Synonym: GTF2B,RNA polymerase II transcription factor IIB,TF2B,Transcription factor II B,general transcription factor IIB Accession: P00668
comment: ENTITY_REFERENCE_ID_DESC=General transcription regulation.PROTEIN.GENERIC.TFIIB
comment: ENTITY_REFERENCE_PROTEIN_TYPE=GENERIC
member entity reference: Transcription initiation factor IIB 3
member entity reference: BRF1, RNA polymerase III transcription initiation factor 90 kDa subunit
member entity reference: Transcription initiation factor IIB
member entity reference: Plant-specific TFIIB-related protein 2
member entity reference: BRF2 isoform 1
member entity reference: Transcription initiation factor IIB 2
member entity reference: Brf, isoform A
member entity reference: Transcription factor IIIB 50 kDa subunit
member entity reference: BRF (Transcription factor) homolog
member entity reference: Cyclin/Brf1-like TBP-binding protein
member entity reference: AGAP009558-PA
member entity reference: General transcription factor IIB
member entity reference: Transcription factor IIB
member entity reference: AGAP004233-PA
member entity reference: Transcription factor IIIB 70 kDa subunit
member entity reference: Predicted protein
member entity reference: Transcription initiation factor IIB 4
member entity reference: Uncharacterized protein
member entity reference: Transcription factor IIIB 60 kDa subunit
member entity reference: Transcription factor IIIB 90 kDa subunit
member entity reference: BRF1 RNA polymerase III transcription initiation factor subunit a
member entity reference: Cilia- and flagella-associated protein 20
member entity reference: Cyclin family protein
member entity reference: Transcription initiation factor IIB 1
member entity reference: General transcription factor 2B
member entity reference: Plant-specific TFIIB-related protein 1
member entity reference: BRF1, RNA polymerase III transcription initiation factor subunit
member entity reference: BRF1 RNA polymerase III transcription initiation factor subunit b
member entity reference: Cilia and flagella associated protein 20
member entity reference: Transcription initiation factor IIB-2
member entity reference: Transcription initiation factor IIB-1
member entity reference: Transcription initiation factor IIB 6
member entity reference: AGAP009680-PA
member entity reference: CFAP20 isoform 1

Transcription initiation factor IIB
type: ProteinReference
xref: PTHR11618:SF13
xref: uniprot O16991 326
organism: Caenorhabditis elegans

uniprot P49906 61
type: UnificationXref
id: P49906
db: uniprot

uniprot F1MME0 26
type: UnificationXref
id: F1MME0
db: uniprot

uniprot A7SJZ7 298
type: UnificationXref
id: A7SJZ7
db: uniprot

AGAP010493-PA (Fragment)
type: ProteinReference
xref: uniprot Q7Q8X9 90
organism: Anopheles gambiae

uniprot Q0DLD3 220
type: UnificationXref
id: Q0DLD3
db: uniprot

uniprot P13984 289
type: UnificationXref
id: P13984
db: uniprot

RNA Polymerase II s53 sa34 rs1
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_ANGLE=3.4485298668715543
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=

uniprot A0A2I3R9X3 125
type: UnificationXref
id: A0A2I3R9X3
db: uniprot

TFIIF
type: Protein
entity reference: TFIIF
feature: COMPLEX PARTICIPANT BINDING FEATURE s54 sa35 467
comment: SPECIES_TYPE=PROTEIN

uniprot Q9SYH2 110
type: UnificationXref
id: Q9SYH2
db: uniprot

Polymerase (RNA) II (DNA directed) polypeptide E
type: ProteinReference
xref: uniprot Q28HF5 169
organism: Xenopus tropicalis

DNA-directed RNA polymerase II subunit RPB3
type: ProteinReference
xref: uniprot Q3T0Q3 171
xref: PTHR11800:SF2
organism: Bos taurus

uniprot Q7QG89 352
type: UnificationXref
id: Q7QG89
db: uniprot

Cyclin family protein
type: ProteinReference
xref: uniprot Q1PEE4 340
organism: Arabidopsis thaliana

uniprot P29055 329
type: UnificationXref
id: P29055
db: uniprot

TATA-box binding protein associated factor 12
type: ProteinReference
xref: uniprot H2PYH5 42
organism: Pan troglodytes

Transcription initiation factor IIA large subunit
type: ProteinReference
xref: uniprot Q9USU9 236
xref: PTHR12694:SF8
organism: Schizosaccharomyces pombe

STATE_TRANSITION
type: InteractionVocabulary

DNA-directed RNA polymerases I, II, and III subunit RPABC2
type: ProteinReference
xref: uniprot F2Z4C9 135
xref: PTHR47227:SF1
organism: Bos taurus

General transcription factor IIF subunit 2
type: ProteinReference
xref: uniprot P41900 291
organism: Drosophila melanogaster

ncbitaxon 6239 93
type: UnificationXref
id: 6239
db: ncbitaxon

uniprot F6YR60 273
type: UnificationXref
id: F6YR60
db: uniprot

RNA Polymerase II s53 sa34 rs2
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.05

Uncharacterized protein
type: ProteinReference
xref: uniprot F7CLY1 144
xref: PTHR11800:SF2
organism: Monodelphis domestica

Candida albicans
type: BioSource
xref: ncbitaxon 237561 332

Predicted protein
type: ProteinReference
xref: uniprot A7SJZ7 298
organism: Nematostella vectensis

Transcription initiation factor IIB
type: ProteinReference
xref: uniprot Q00403 338
organism: Homo sapiens

PTHR46338:SF10
type: RelationshipXref
id: PTHR46338:SF10
db: PANTHER Family
relationship type: By Homology

Uncharacterized protein
type: ProteinReference
xref: uniprot B7Q0X0 301
organism: Ixodes scapularis

uniprot F7H5J8 209
type: UnificationXref
id: F7H5J8
db: uniprot

AGAP003094-PA
type: ProteinReference
xref: uniprot Q7QBM3 91
organism: Anopheles gambiae

STATE_TRANSITION_LEFT__transcription_elongation_complex-_TTF2-RIGHT__transcription_new_RNA_complex-_r61
type: BiochemicalReaction
conversion direction: LEFT_TO_RIGHT
xref: STATE TRANSITION
participant stoichiometry: PARTICIPANT STOICHIOMETRY r61 505
participant stoichiometry: PARTICIPANT STOICHIOMETRY r61 504
participant stoichiometry: PARTICIPANT STOICHIOMETRY r61 506
left: TTF2
left: transcription elongation complex
interaction type: STATE_TRANSITION
right: transcription new RNA complex

Uncharacterized protein
type: ProteinReference
xref: uniprot F7G0B2 38
xref: PTHR46469:SF1
organism: Macaca mulatta

uniprot P49848 59
type: UnificationXref
id: P49848
db: uniprot

RNA Polymerase II s53 sa34 rs3
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=4.93

RNA Polymerase II s45 sa30 rs4
type: ModificationFeature
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

uniprot B7Q0X0 301
type: UnificationXref
id: B7Q0X0
db: uniprot

PANTHER Pathway P00023 1
type: UnificationXref
id: P00023
db: PANTHER Pathway

IGI
type: EvidenceCodeVocabulary
xref: eco ECO:0000316 219

TBP-associated factors
type: Protein
entity reference: TBP-associated factors
feature: COMPLEX PARTICIPANT BINDING FEATURE s14 sa17 453
comment: SPECIES_TYPE=PROTEIN

DNA-directed RNA polymerases IV and V subunit 5B
type: ProteinReference
xref: uniprot Q9ZVB9 190
xref: PTHR10535:SF10
organism: Arabidopsis thaliana

RNA Polymerase II
type: Protein
entity reference: RNA Polymerase II
feature: RNA Polymerase II s45 sa30 rs2
feature: RNA Polymerase II s45 sa30 rs4
feature: RNA Polymerase II s45 sa30 rs3
feature: RNA Polymerase II s45 sa30 rs1
feature: COMPLEX PARTICIPANT BINDING FEATURE s45 sa30 401
comment: SPECIES_TYPE=PROTEIN

uniprot Q92994 361
type: UnificationXref
id: Q92994
db: uniprot

uniprot O74948 213
type: UnificationXref
id: O74948
db: uniprot

PSMC3 interacting protein
type: ProteinReference
xref: uniprot E2RCC0 378
organism: Canis lupus familiaris

Uncharacterized protein
type: ProteinReference
xref: uniprot A0A1L1RN70 297
organism: Gallus gallus

Transcription initiation factor TFIID subunit 4
type: ProteinReference
xref: PTHR15138:SF18
xref: uniprot O00268 48
organism: Homo sapiens

TAF (TBP-associated transcription factor) family
type: ProteinReference
xref: uniprot Q7YTH5 92
xref: PTHR46469:SF1
organism: Caenorhabditis elegans

uniprot P62340 382
type: UnificationXref
id: P62340
db: uniprot

RNA Polymerase II s53 sa34 rs4
type: ModificationFeature
modification type: phosphorylated residue
comment: MODIFICATION_RESIDUE_SIDE=none
comment: MODIFICATION_RESIDUE_TYPE=residue
comment: MODIFICATION_RESIDUE_NAME=
comment: MODIFICATION_RESIDUE_ANGLE=5.5

uniprot D3ZCP9 271
type: UnificationXref
id: D3ZCP9
db: uniprot

uniprot Q9VHY5 112
type: UnificationXref
id: Q9VHY5
db: uniprot

elongating mRNA
type: RnaRegion
feature: COMPLEX PARTICIPANT BINDING FEATURE s46 a123 431
comment: SPECIES_TYPE=RNA

TFIIEalpha
type: Protein
entity reference: TFIIEalpha
feature: COMPLEX PARTICIPANT BINDING FEATURE s3 sa3 451
comment: SPECIES_TYPE=PROTEIN

PTHR10126:SF55
type: RelationshipXref
id: PTHR10126:SF55
db: PANTHER Family
relationship type: By Homology

ncbitaxon 64091 364
type: UnificationXref
id: 64091
db: ncbitaxon

Uncharacterized protein
type: ProteinReference
xref: PTHR10535:SF0
xref: uniprot E9G252 132
organism: Daphnia pulex

uniprot Q9NEW8 107
type: UnificationXref
id: Q9NEW8
db: uniprot

uniprot B9EJ57 192
type: UnificationXref
id: B9EJ57
db: uniprot

Transcription factor IIIB 50 kDa subunit
type: ProteinReference
xref: uniprot Q4V8D6 342
organism: Rattus norvegicus

DNA-directed RNA polymerase II subunit RPB3
type: ProteinReference
xref: uniprot P37382 160
xref: PTHR11800:SF2
organism: Schizosaccharomyces pombe

uniprot Q561R7 262
type: UnificationXref
id: Q561R7
db: uniprot

uniprot Q6B857 348
type: UnificationXref
id: Q6B857
db: uniprot

uniprot Q9P5N7 269
type: UnificationXref
id: Q9P5N7
db: uniprot

uniprot F7F0J5 381
type: UnificationXref
id: F7F0J5
db: uniprot