This folder contains orthologs files predicted by PANTHER phylogenetic trees.

1. RefGenomeOrthologs.tar.gz

This file contains orthologs among 12 MOD from the reference genome project.

2. Orthologs_HCOP.tar.gz

This file contains orthologs for the HUGO Comparison of Orthology Prediction (HCOP) tool.

3. PlantGenomeOrthologs.tar.gz

The file contains orthoglogs for the 40 plant genomes

4. QfO_Genome_Orthologs.tar.gz

This file contains orthologs for the Quest For Orthologs project.


File format
Col 1    Gene
Col 2    Ortholog
Col 3    Type of ortholog* (LDO = least diverged ortholog; O = other more diverged orthologs) 
Col 4    Common ancestor for the orthologs

* Starting PANTHER 15.0, paralogs (P), horizontal gene transfer (X) and least diverged horizontal gene transfer (LDX) are no longer included in the file.