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PANTHER Pathway - v3.5
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05/15/2017
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The current version of PANTHER Pathway contains 177 pathways.
Statistics:
175		pathways
2740		pathway components
22259		protein sequences directly linked to the pathway components
3106		references (PubMed and OMIM) captured

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In the current directory:

>All sequence associations to pathway components are stored in the file
SequenceAssociationPathway3.4.1.txt

The format of the file is as below (separated by TAB)

Pathway accession
Pathway name
Pathway component accession
Pathway component name
UniProt ID
Protein definition
Confidence code
Evidence
Evidence type (e.g., PubMed, OMIM)
PANTHER subfamily ID (the SF to which the sequence belongs to)
PANTHER subfamily name

>All SBML files are stored in SBML.zip.  
All pathway diagrams are stored in SBML format.  The diagrams were generated 
using CellDesigner v.3.5.  To view diagrams, please download CellDesigner software from http://www.celldesinger.org

>XML files of pathways compatible with the newly released CellDesigner v. 4.1 are in the CD4.1.zip.

>BioPAX format of pathways are stored in BioPAX.zip
The BioPAX format of the pathways are in owl files generated from the CellDesigner 4.1 xml files using the CDtoBioPAX converter developed by the PANTHER group (Pubmed 22021903).