2.2 SQUARE_CLOSEUP_SOUTHEAST inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive active inactive inactive inactive inactive inactive active inactive inactive inactive inactive inactive inactive inactive inactive active inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive inactive active inactive inactive inactive inactive inactive active inactive inactive active active inactive active inactive inactive inactive inactive active active inactive active active inactive active active inactive inactive active inactive inactive inactive inactive inactive inactive inactive inactive inactive active active inactive inactive inactive inactive inactive active inactive inactive active inactive active active inactive inactive inactive inactive cytosol Long Name: TBP Synonym: GTF2D,GTF2D1,SCA17,TATA box binding protein,TFIID,spinocerebellar ataxia 17 Accession: P01399 inside PROTEIN p4 Long Name: TFIIF Synonym: TF2F,TRANSCRIPTION FACTOR IIF Accession: P01394 inside PROTEIN p12 Long Name: ATP Synonym: Synonym not specified Accession: S01865 inside SIMPLE_MOLECULE ATP Long Name: ADP Synonym: Synonym not specified Accession: S01870 inside SIMPLE_MOLECULE ADP Long Name: RNA Polymerase II Synonym: Synonym not specified Accession: P01388 inside PROTEIN p8 Long Name: RNA Polymerase II Synonym: Synonym not specified Accession: P01388 inside PROTEIN p8 Long Name: TATA box Promoter gene Synonym: Synonym not specified Accession: G01553 inside GENE TATA box Promoter gene Long Name: CTP Synonym: Synonym not specified Accession: S01867 inside SIMPLE_MOLECULE CTP Long Name: GTP Synonym: Synonym not specified Accession: S01868 inside SIMPLE_MOLECULE GTP Long Name: UTP Synonym: Synonym not specified Accession: S01866 inside SIMPLE_MOLECULE UTP Long Name: TBP-associated factors Synonym: TATA box binding protein-associated factors Accession: P01385 inside PROTEIN p3 Long Name: General transcription factor IIF, polypeptide 1, 74-KD Synonym: BTF4,GTF2F1,RAP74,TF2F1,TFIIF ALPHA,TRANSCRIPTION FACTOR IIF Accession: P01391 inside PROTEIN p16 Long Name: TFIIFbeta Synonym: BETA SUBUNIT,RAP30,TF2F2,TFIIF BETA,TRANSCRIPTION FACTOR IIF Accession: P01396 inside PROTEIN p18 Long Name: TFIIB Synonym: GTF2B,RNA polymerase II transcription factor IIB,TF2B,general transcription factor IIB Accession: P01397 inside PROTEIN p7 Long Name: TFIIE Synonym: TF2E,TFIIE Accession: P01395 inside PROTEIN p20 Long Name: Long Name: TFIIEbeta Synonym: Synonym not specified Accession: U05578 Heterodimer Member Info: TFIIEbeta#PROTEIN#TFIIEbeta#P01386#GENERAL TRANSCRIPTION FACTOR IIE|GTF2E2|POLYPEPTIDE 2|TF2E2|TFIIE BETA SUBUNIT|TRANSCRIPTION FACTOR IIE BETA SUBUNIT# inside PROTEIN p22 PROTEIN p22 Long Name: Long Name: TFIIEalpha Synonym: Synonym not specified Accession: U05579 Heterodimer Member Info: TFIIEalpha#PROTEIN#TFIIEalpha#P01398#ALPHA SUBUNIT|GENERAL TRANSCRIPTION FACTOR IIE|GTF2E1|POLYPEPTIDE 1|TF2E1|TFIIE|TRANSCRIPTION FACTOR IIE ALPHA SUBUNIT# inside PROTEIN p21 PROTEIN p21 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05574 Heterodimer Member Info: TBP-associated factors#PROTEIN#TBP-associated factors#P01385#TATA box binding protein-associated factors#;TBP#PROTEIN#TBP#P01399#GTF2D|GTF2D1|SCA17|TATA box binding protein|TFIID|spinocerebellar ataxia 17# inside PROTEIN p4 PROTEIN p3 Long Name: elongating mRNA Synonym: Synonym not specified Accession: G01557 inside RNA elongating mRNA Long Name: RNA Synonym: Synonym not specified Accession: G01554 inside RNA RNA Long Name: TATA box Promoter gene termination Synonym: Synonym not specified Accession: G01551 inside GENE TATA box Promoter gene termination Long Name: mRNA Synonym: Synonym not specified Accession: G01555 inside RNA mRNA Long Name: TFIIH Synonym: GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1,GTF2H 62-KD SUBUNIT,GTF2H1,TFIIH 62-KD SUBUNIT,TRANSCRIPTION FACTOR IIH 62-KD SUBUNIT Accession: P01392 inside PROTEIN p13 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05580 Heterodimer Member Info: RNA Polymerase II#PROTEIN#RNA Polymerase II#P01388##;TFIIF#PROTEIN#TFIIF#P01394#TF2F|TRANSCRIPTION FACTOR IIF# inside PROTEIN p12 PROTEIN p8 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05584 Heterodimer Member Info: TBP-associated factors#PROTEIN#TBP-associated factors#P01385#TATA box binding protein-associated factors#;TBP#PROTEIN#TBP#P01399#GTF2D|GTF2D1|SCA17|TATA box binding protein|TFIID|spinocerebellar ataxia 17# inside PROTEIN p3 PROTEIN p4 Long Name: TFIIA Synonym: ALF,GENERAL TRANSCRIPTION FACTOR IIA GAMMA SUBUNITS,GTF2A1-like factor,MGC26254,TFIIA large subunit isoform ALF,TFIIA-alpha/beta-like factor Accession: P01390 inside PROTEIN p19 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05585 Heterodimer Member Info: TBP-associated factors#PROTEIN#TBP-associated factors#P01385#TATA box binding protein-associated factors#;TFIIA complex#PROTEIN#TFIIA#P01390#ALF|GENERAL TRANSCRIPTION FACTOR IIA GAMMA SUBUNITS|GTF2A1-like factor|MGC26254|TFIIA large subunit isoform ALF|TFIIA-alpha/beta-like factor#;TATA box Promoter#GENE#TATA box Promoter#G01556##;TBP#PROTEIN#TBP#P01399#GTF2D|GTF2D1|SCA17|TATA box binding protein|TFIID|spinocerebellar ataxia 17# inside PROTEIN p3 PROTEIN p4 GENE TATA box Promoter PROTEIN p19 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05575 Heterodimer Member Info: TBP-associated factors#PROTEIN#TBP-associated factors#P01385#TATA box binding protein-associated factors#;TFIIA complex#PROTEIN#TFIIA#P01390#ALF|GENERAL TRANSCRIPTION FACTOR IIA GAMMA SUBUNITS|GTF2A1-like factor|MGC26254|TFIIA large subunit isoform ALF|TFIIA-alpha/beta-like factor#;TFIIB#PROTEIN#TFIIB#P01397#GTF2B|RNA polymerase II transcription factor IIB|TF2B|general transcription factor IIB#;TATA box Promoter#GENE#TATA box Promoter#G01556##;TBP#PROTEIN#TBP#P01399#GTF2D|GTF2D1|SCA17|TATA box binding protein|TFIID|spinocerebellar ataxia 17# inside PROTEIN p3 PROTEIN p4 GENE TATA box Promoter PROTEIN p7 PROTEIN p19 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05582 Heterodimer Member Info: TBP-associated factors#PROTEIN#TBP-associated factors#P01385#TATA box binding protein-associated factors#;RNA Polymerase II#PROTEIN#RNA Polymerase II#P01388##;TFIIA complex#PROTEIN#TFIIA#P01390#ALF|GENERAL TRANSCRIPTION FACTOR IIA GAMMA SUBUNITS|GTF2A1-like factor|MGC26254|TFIIA large subunit isoform ALF|TFIIA-alpha/beta-like factor#;TFIIH complex#PROTEIN#TFIIH#P01392#GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1|GTF2H 62-KD SUBUNIT|GTF2H1|TFIIH 62-KD SUBUNIT|TRANSCRIPTION FACTOR IIH 62-KD SUBUNIT#;TFIIF#PROTEIN#TFIIF#P01394#TF2F|TRANSCRIPTION FACTOR IIF#;TFIIE#PROTEIN#TFIIE#P01395#TF2E|TFIIE#;TFIIB#PROTEIN#TFIIB#P01397#GTF2B|RNA polymerase II transcription factor IIB|TF2B|general transcription factor IIB#;TATA box Promoter#GENE#TATA box Promoter#G01556##;TBP#PROTEIN#TBP#P01399#GTF2D|GTF2D1|SCA17|TATA box binding protein|TFIID|spinocerebellar ataxia 17# inside GENE TATA box Promoter PROTEIN p4 PROTEIN p3 PROTEIN p19 PROTEIN p13 PROTEIN p7 PROTEIN p8 PROTEIN p12 PROTEIN p20 Long Name: CREB Synonym: cAMP responsive element binding protein Accession: P01383 inside PROTEIN p23 Long Name: CREB Synonym: cAMP responsive element binding protein Accession: P01383 inside PROTEIN p23 Long Name: CREB Synonym: cAMP responsive element binding protein Accession: P01383 inside PROTEIN p23 2 Long Name: CRE Synonym: Synonym not specified Accession: G01552 inside GENE CRE Long Name: cAMP Synonym: Synonym not specified Accession: S01869 inside SIMPLE_MOLECULE cAMP Long Name: Protein Kinase A Synonym: protein kinase A Accession: P01384 inside PROTEIN p25 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05576 Heterodimer Member Info: CREB#PROTEIN#CREB#P01383#cAMP responsive element binding protein#;CBP/P300#PROTEIN#CBP/P300#P01387#CREB-binding protein# inside PROTEIN p23 2 PROTEIN p24 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05583 Heterodimer Member Info: TBP-associated factors#PROTEIN#TBP-associated factors#P01385#TATA box binding protein-associated factors#;RNA Polymerase II#PROTEIN#RNA Polymerase II#P01388##;TFIIA complex#PROTEIN#TFIIA#P01390#ALF|GENERAL TRANSCRIPTION FACTOR IIA GAMMA SUBUNITS|GTF2A1-like factor|MGC26254|TFIIA large subunit isoform ALF|TFIIA-alpha/beta-like factor#;TFIIH complex#PROTEIN#TFIIH#P01392#GENERAL TRANSCRIPTION FACTOR IIH POLYPEPTIDE 1|GTF2H 62-KD SUBUNIT|GTF2H1|TFIIH 62-KD SUBUNIT|TRANSCRIPTION FACTOR IIH 62-KD SUBUNIT#;TFIIF#PROTEIN#TFIIF#P01394#TF2F|TRANSCRIPTION FACTOR IIF#;TFIIB#PROTEIN#TFIIB#P01397#GTF2B|RNA polymerase II transcription factor IIB|TF2B|general transcription factor IIB#;TATA box Promoter#GENE#TATA box Promoter#G01556##;TBP#PROTEIN#TBP#P01399#GTF2D|GTF2D1|SCA17|TATA box binding protein|TFIID|spinocerebellar ataxia 17# inside GENE TATA box Promoter PROTEIN p8 PROTEIN p12 PROTEIN p4 PROTEIN p3 PROTEIN p13 PROTEIN p19 PROTEIN p7 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05581 Heterodimer Member Info: CREB#PROTEIN#CREB#P01383#cAMP responsive element binding protein#;CBP/P300#PROTEIN#CBP/P300#P01387#CREB-binding protein# inside PROTEIN p24 PROTEIN p23 2 Long Name: Receptor Synonym: Synonym not specified Accession: P01400 transmembrane PROTEIN p26 Long Name: hormone Synonym: Synonym not specified Accession: P01393 inside PROTEIN p27 Long Name: TTF2 Synonym: TRANSCRIPTION TERMINATION FACTOR RNA POLYMERASE II,human factor 2 Accession: P01389 inside PROTEIN p28 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05573 Heterodimer Member Info: hormone#PROTEIN#hormone#P01393##;Receptor#PROTEIN#Receptor#P01400## transmembrane PROTEIN p26 PROTEIN p27 Long Name: CBP/P300 Synonym: CREB-binding protein Accession: P01387 inside PROTEIN p24 Long Name: Long Name: Long name not specified Synonym: Synonym not specified Accession: U05577 Heterodimer Member Info: CRE#GENE#CRE#G01552##;TATA box Promoter#GENE#TATA box Promoter#G01556## inside GENE CRE GENE TATA box Promoter HETERODIMER_ASSOCIATION s34,s36 s20 0.33333333333333304,0.0 0.6666666666666634,0.0 0.33333333333333215,0.0 0.6666666666666643,1.7763568394002505E-15 0.33333333333333215,1.7763568394002505E-15 0.6666666666666652,0.0 0.33333333333333215,0.3333333333333339 a84 a86 a42 HETERODIMER_ASSOCIATION s11,s12 s44 0.3333333333333348,-4.440892098500626E-16 0.666666666666667,-4.440892098500626E-16 0.3333333333333304,-4.440892098500626E-16 0.6666666666666661,-4.440892098500626E-16 0.3333333333333335,-7.771561172376096E-16 0.6666666666666665,-1.7208456881689926E-15 0.33333333333333304,0.33333333333333304 a18 a19 a106 HETERODIMER_ASSOCIATION s43,s41 s38 0.3333333333333304,0.0 0.6666666666666643,0.0 0.33333333333333215,0.0 0.6666666666666714,-2.6645352591003757E-15 0.3333333333333357,-8.881784197001252E-16 0.6666666666666696,-8.881784197001252E-16 0.33333333333333215,0.3333333333333339 a113 a114 a112 STATE_TRANSITION s55 s59 0.3333333333333337,0.0 0.666666666666667,0.0 a141 a24 a147 HETERODIMER_ASSOCIATION s16,s20 s60 0.33333333333333304,8.881784197001252E-16 0.6666666666666661,8.881784197001252E-16 0.33333333333333304,0.0 0.666666666666667,-8.881784197001252E-16 0.3333333333333339,1.1102230246251565E-16 0.6666666666666661,1.1102230246251565E-16 0.3333333333333339,0.3333333333333335 a29 a42 a148 HETERODIMER_ASSOCIATION s59,s60 s77 0.33333333333333304,2.220446049250313E-16 0.666666666666667,0.0 0.33333333333333304,0.0 0.6666666666666665,0.0 0.33333333333333337,0.0 0.6666666666666664,0.0 -0.002396850720814969,0.4570257656167567 a147 a148 a112 a44 a176 STATE_TRANSITION s77 s91 0.33333333333333304,0.0 0.666666666666667,0.0 a176 a66 a200 a67 a223 STATE_TRANSITION s91 s26 0.3333333333333335,-3.0531133177191805E-16 0.6666666666666665,-5.273559366969494E-16 a200 a217 a220 a221 a219 STATE_TRANSITION s28 s28 0.33333333333333337,-3.1086244689504383E-15 0.6666666666666669,-6.217248937900877E-15 a218 a81 a80 a79 a78 a121 STATE_TRANSITION s28 s49 0.33333333333333326,7.105427357601002E-15 0.6666666666666667,1.3988810110276972E-14 a121 a292 a126 STATE_TRANSITION s101 s102 0.33333333333333326,0.0 0.6666666666666665,0.0 a224 a225 a227 a226 STATE_TRANSITION s102 s103 0.3333333333333335,-2.220446049250313E-16 0.666666666666667,0.0 a227 a237 TRANSCRIPTIONAL_INHIBITION s49 s49 0.3333333333333335,0.0 0.6666666666666665,0.0 a126 a131 a130 a133 a132 HETERODIMER_ASSOCIATION s120,s119 s125 0.3333333333333326,0.0 0.666666666666667,0.0 0.33333333333333326,0.0 0.6666666666666663,0.0 0.3333333333333337,6.661338147750939E-16 0.6666666666666667,2.220446049250313E-16 0.33333333333333326,0.3333333333333335 a291 a290 a299 STATE_TRANSITION s22 s106 0.33333333333333326,0.0 0.6666666666666665,0.0 a300 a243 HETERODIMER_ASSOCIATION s104,s103 s118 0.33333333333333304,-8.881784197001252E-16 0.6666666666666665,-8.881784197001252E-16 0.33333333333333304,2.220446049250313E-16 0.6666666666666661,4.440892098500626E-16 0.3333333333333339,-1.1102230246251565E-16 0.666666666666667,-1.1102230246251565E-16 0.3333333333333337,0.3333333333333335 a238 a237 a305 HETERODIMER_ASSOCIATION s127,s44 s55 0.3333333333333335,1.1102230246251565E-16 0.6666666666666665,-1.1102230246251565E-16 0.3333333333333335,0.0 0.6666666666666665,0.0 0.33333333333333304,-8.881784197001252E-16 0.6666666666666661,-1.7763568394002505E-15 0.4305968700647664,0.3206559359444303 a306 a106 a305 a87 a141 STATE_TRANSITION s107 s107 0.33333333333333304,-4.440892098500626E-16 0.6666666666666661,4.440892098500626E-16 a307 a244