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The plasminogen activation cascade is a serine protease cascade in which the inactive zymogen plasminogen is converted into plasmin.  Plasmin&apos;s primary function is thought to be the dissolution of blood clots.  Plasmin is also thought to act as a proteolytic activator of other processes including tissue remodeling through its activation of the matrix metalloproteases.
Medline=11382594
OMIM=173350
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<celldesigner:innerPosition x="35.55000000000064" y="27.75"/>
<celldesigner:boxSize width="23.0" height="42.0"/>
<celldesigner:singleLine width="1.0"/>
<celldesigner:paint color="ffccffcc" scheme="Color"/>
</celldesigner:usualView>
<celldesigner:briefView>
<celldesigner:innerPosition x="0.0" y="0.0"/>
<celldesigner:boxSize width="0.0" height="0.0"/>
<celldesigner:singleLine width="0.0"/>
<celldesigner:paint color="3fff0000" scheme="Color"/>
</celldesigner:briefView>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:speciesAlias>
<celldesigner:speciesAlias id="sa20" species="s26" complexSpeciesAlias="a111">
<celldesigner:activity>inactive</celldesigner:activity>
<celldesigner:bounds x="895.1999999999994" y="179.5" w="56.0" h="37.0"/>
<celldesigner:view state="usual"/>
<celldesigner:usualView>
<celldesigner:innerPosition x="2.25" y="2.25"/>
<celldesigner:boxSize width="56.0" height="37.0"/>
<celldesigner:singleLine width="1.0"/>
<celldesigner:paint color="ffccffcc" scheme="Color"/>
</celldesigner:usualView>
<celldesigner:briefView>
<celldesigner:innerPosition x="0.0" y="0.0"/>
<celldesigner:boxSize width="0.0" height="0.0"/>
<celldesigner:singleLine width="0.0"/>
<celldesigner:paint color="3fff0000" scheme="Color"/>
</celldesigner:briefView>
<celldesigner:info state="empty" angle="-1.5707963267948966"/>
</celldesigner:speciesAlias>
</celldesigner:listOfSpeciesAliases>
<celldesigner:listOfGroups/>
<celldesigner:listOfProteins>
<celldesigner:protein id="p21" name="Plasmin" type="GENERIC"/>
<celldesigner:protein id="p22" name="Plasminogen" type="GENERIC"/>
<celldesigner:protein id="p26" name="_alpha_2_space_antiplasmin" type="GENERIC"/>
<celldesigner:protein id="p27" name="Fibrin" type="GENERIC"/>
<celldesigner:protein id="p28" name="Fibrin_space_C-terminal_space_truncation" type="TRUNCATED"/>
<celldesigner:protein id="p29" name="TAFI" type="GENERIC"/>
<celldesigner:protein id="p1" name="uPAR" type="RECEPTOR"/>
<celldesigner:protein id="p2" name="pro_minus_uPA" type="GENERIC"/>
<celldesigner:protein id="p30" name="PAI_minus_2" type="GENERIC"/>
<celldesigner:protein id="p19" name="pro_minus_tPA" type="GENERIC"/>
<celldesigner:protein id="p8" name="PAI_minus_1" type="GENERIC"/>
<celldesigner:protein id="p9" name="pro_minus_MMP_minus_13" type="GENERIC"/>
<celldesigner:protein id="p11" name="pro_minus_MMP_minus_3" type="GENERIC"/>
<celldesigner:protein id="p12" name="pro_minus_MMP_minus_1" type="GENERIC"/>
<celldesigner:protein id="p16" name="pro_minus_MMP_minus_9" type="GENERIC"/>
<celldesigner:protein id="p95" name="?" type="TRUNCATED"/>
<celldesigner:protein id="p15" name="MMP_minus_1" type="GENERIC"/>
<celldesigner:protein id="p17" name="MMP_minus_9" type="GENERIC"/>
<celldesigner:protein id="p10" name="MMP_minus_13" type="GENERIC"/>
<celldesigner:protein id="p14" name="MMP_minus_3" type="GENERIC"/>
<celldesigner:protein id="p3" name="uPA" type="GENERIC"/>
<celldesigner:protein id="p20" name="tPA" type="GENERIC"/>
</celldesigner:listOfProteins>
<celldesigner:listOfGenes/>
<celldesigner:listOfRNAs/>
<celldesigner:listOfAntisenseRNAs/>
<celldesigner:listOfLayers/>
<celldesigner:listOfBlockDiagrams/>
</celldesigner:extension>
</annotation>
<listOfUnitDefinitions>
<unitDefinition metaid="substance" id="substance" name="substance">
<listOfUnits>
<unit metaid="CDMT00061" kind="mole"/>
</listOfUnits>
</unitDefinition>
<unitDefinition metaid="volume" id="volume" name="volume">
<listOfUnits>
<unit metaid="CDMT00062" kind="litre"/>
</listOfUnits>
</unitDefinition>
<unitDefinition metaid="area" id="area" name="area">
<listOfUnits>
<unit metaid="CDMT00063" kind="metre" exponent="2"/>
</listOfUnits>
</unitDefinition>
<unitDefinition metaid="length" id="length" name="length">
<listOfUnits>
<unit metaid="CDMT00064" kind="metre"/>
</listOfUnits>
</unitDefinition>
<unitDefinition metaid="time" id="time" name="time">
<listOfUnits>
<unit metaid="CDMT00065" kind="second"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<listOfCompartments>
<compartment metaid="default" id="default" size="1" units="volume"/>
<compartment metaid="c3" id="c3" name="endothelial cell" size="1" units="volume" outside="default">
<annotation>
<celldesigner:extension>
<celldesigner:name>endothelial cell</celldesigner:name>
</celldesigner:extension>
</annotation>
</compartment>
<compartment metaid="c2" id="c2" name="epithelial cell " size="1" units="volume" outside="default">
<annotation>
<celldesigner:extension>
<celldesigner:name>epithelial cell </celldesigner:name>
</celldesigner:extension>
</annotation>
</compartment>
<compartment metaid="c4" id="c4" name="fibroblast" size="1" units="volume" outside="default">
<annotation>
<celldesigner:extension>
<celldesigner:name>fibroblast</celldesigner:name>
</celldesigner:extension>
</annotation>
</compartment>
</listOfCompartments>
<listOfSpecies>
<species metaid="s39" id="s39" name="Thrombus (fibrin clot)" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Thrombus (fibrin clot)
Synonym:  Synonym not specified
Accession:  U02590
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>UNKNOWN</celldesigner:class>
<celldesigner:name>Thrombus (fibrin clot)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s24" id="s24" name="Plasmin" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Plasmin
Synonym:  Synonym not specified
Accession:  P01246
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p21</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
<celldesigner:listOfCatalyzedReactions>
<celldesigner:catalyzed reaction="r12"/>
<celldesigner:catalyzed reaction="r27"/>
<celldesigner:catalyzed reaction="r28"/>
<celldesigner:catalyzed reaction="r30"/>
<celldesigner:catalyzed reaction="r31"/>
<celldesigner:catalyzed reaction="r33"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s25" id="s25" name="Plasminogen" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Plasminogen
Synonym:  Synonym not specified
Accession:  P01255
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p22</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s49" id="s49" name="_alpha_2_space_antiplasmin" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  alpha2 antiplasmin
Synonym:  alpha_2 antiplasmin,alpha_2-PI,plasmin inhibitor alpha_2,serine protease inhibitor F2
Accession:  P01264
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p26</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s51" id="s51" name="Complex_br_(Plasmin/_alpha_2_space_antiplasmin)" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  Plasmin
Synonym:  Synonym not specified
Accession:  U05504
Heterodimer Member Info:  Plasmin#PROTEIN#Plasmin#P01246##;alpha2 antiplasmin#PROTEIN#alpha2 antiplasmin#P01264#alpha_2 antiplasmin|alpha_2-PI|plasmin inhibitor alpha_2|serine protease inhibitor F2#
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(Plasmin/_alpha_2_space_antiplasmin)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s40" id="s40" name="Fibrin" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Fibrin
Synonym:  Fibrin degradation products
Accession:  P01253
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p27</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s52" id="s52" name="Fibrin_space_C-terminal_space_truncation" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Fibrin degradation products
Synonym:  Fibrin C-terminal truncation
Accession:  P01258
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p28</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s53" id="s53" name="TAFI" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  thrombin activatable fibrinolysis inhibitor
Synonym:  Thrombin activatable fibrinolysis inhibitor,carboxypeptidase R,carboxypeptidase U,procarboxypeptidase B2
Accession:  P01247
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p29</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
<celldesigner:listOfCatalyzedReactions>
<celldesigner:catalyzed reaction="r16"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s15" id="s15" name="Complex_br_(uPAR/GPI linker)" compartment="c2" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  GPI linker
Synonym:  Synonym not specified
Accession:  U05502
Heterodimer Member Info:  uPAR#PROTEIN#urokinase type plasminogen activator receptor#P01256#CD87|PLAU-R|PLAUR|UPA-R|soluble urokinase plasminogen activator|suPAR|urinary plasminogen activator receptor|urokinase plasminogen activator receptor|urokinase receptor#;GPI linker#SIMPLE_MOLECULE#GPI linker#S01824##
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(uPAR/GPI linker)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s3" id="s3" name="pro_minus_uPA" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-urokinase type plasminogen activator
Synonym:  pro plasminogen activator, urinary,pro-PLAU,pro-urokinase,pro-urokinase plasminogen activator
Accession:  P01262
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p2</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s11" id="s11" name="Complex_br_(GPI linker/uPAR/_br_pro_minus_uPA)" compartment="c2" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  GPI linker
Synonym:  Synonym not specified
Accession:  U05508
Heterodimer Member Info:  uPAR#PROTEIN#urokinase type plasminogen activator receptor#P01256#CD87|PLAU-R|PLAUR|UPA-R|soluble urokinase plasminogen activator|suPAR|urinary plasminogen activator receptor|urokinase plasminogen activator receptor|urokinase receptor#;GPI linker#SIMPLE_MOLECULE#GPI linker#S01824##;pro-uPA#PROTEIN#pro-urokinase type plasminogen activator#P01262#pro plasminogen activator, urinary|pro-PLAU|pro-urokinase|pro-urokinase plasminogen activator#
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(GPI linker/uPAR/_br_pro_minus_uPA)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s61" id="s61" name="PAI_minus_2" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  PAI-2
Synonym:  Monocyte Arginine serpin,Monocyte derived Plasminogen activator inhibitor,PLANH2,Plasminogen activator inhibitor 2,Serpin B2,Urokinase inhibitor
Accession:  P01244
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p30</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s46" id="s46" name="pro_minus_tPA" compartment="c3" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-tissue type plasminogen activator
Synonym:  pro-Tissue type plasminogen activator,pro-alteplase,pro-plasminogen activator, tissue,pro-tissue plasminogen activator
Accession:  P01249
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p19</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s27" id="s27" name="PAI_minus_1" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  PAI-1
Synonym:  Endothelial plasminogen activator inhibitor,Plasminogen activator inhibitor 1,Serpin E1
Accession:  P01245
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p8</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s35" id="s35" name="pro_minus_MMP_minus_13" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-matrix metalloprotease 13
Synonym:  pro-Collagenase 3,pro-Matrix metalloproteinase 13 
Accession:  P01254
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p9</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s60" id="s60" name="pro_minus_MMP_minus_13" compartment="c4" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-matrix metalloprotease 13
Synonym:  pro-Collagenase 3,pro-Matrix metalloproteinase 13 
Accession:  P01254
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p9</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s37" id="s37" name="pro_minus_MMP_minus_3" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-Matrix metalloprotease 3
Synonym:  pro-Matrix metalloproteinase 3,pro-stromelysin,pro-stromelysin 1,pro-transin
Accession:  P01260
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p11</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s57" id="s57" name="pro_minus_MMP_minus_3" compartment="c4" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-Matrix metalloprotease 3
Synonym:  pro-Matrix metalloproteinase 3,pro-stromelysin,pro-stromelysin 1,pro-transin
Accession:  P01260
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p11</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s38" id="s38" name="pro_minus_MMP_minus_1" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-Matrix metalloprotease 1
Synonym:  pro-Collagenase,pro-Fibroblast Collagenase,pro-Interstitial Collagenase,pro-Matrix metalloproteinase 1
Accession:  P01263
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p12</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s59" id="s59" name="pro_minus_MMP_minus_1" compartment="c4" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-Matrix metalloprotease 1
Synonym:  pro-Collagenase,pro-Fibroblast Collagenase,pro-Interstitial Collagenase,pro-Matrix metalloproteinase 1
Accession:  P01263
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p12</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s43" id="s43" name="pro_minus_MMP_minus_9" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-matrix metalloprotease 9
Synonym:  pro-Gelatinase B,pro-Matrix metalloproteinase 9
Accession:  P01259
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p16</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s58" id="s58" name="pro_minus_MMP_minus_9" compartment="c4" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  pro-matrix metalloprotease 9
Synonym:  pro-Gelatinase B,pro-Matrix metalloproteinase 9
Accession:  P01259
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p16</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s199" id="s199" name="?" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  ?
Synonym:  Synonym not specified
Accession:  P01261
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p95</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s42" id="s42" name="MMP_minus_1" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Matrix metalloprotease 1
Synonym:  Collagenase,Fibroblast Collagenase,Interstitial Collagenase,MMP-1,Matrix metalloproteinase 1
Accession:  P01252
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p15</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s44" id="s44" name="MMP_minus_9" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Matrix metalloprotease 9
Synonym:  Collagenase type IV,Collagenase type IV-B,Collagenase type V,Gelatinase B,Gelatinase, 92kD,MMP-9,Matrix metalloproteinase 9
Accession:  P01248
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p17</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s36" id="s36" name="MMP_minus_13" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Matrix metalloprotease 13
Synonym:  Collagenase 3,Matrix metalloproteinase 13
Accession:  P01250
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p10</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s41" id="s41" name="MMP_minus_3" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Matrix metalloprotease 3
Synonym:  Fibroblast stromelysin,Matrix metalloprotease 3,Matrix metalloproteinase 3,Stromelysin,Transin
Accession:  P01251
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p14</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s21" id="s21" name="Complex_br_(GPI linker/uPAR/_br_uPA)" compartment="c2" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  GPI linker
Synonym:  Synonym not specified
Accession:  U05507
Heterodimer Member Info:  uPA#PROTEIN#urokinase type plasminogen activator#P01243#PLAU|plasminogen activator, urinary|urokinase#;uPAR#PROTEIN#urokinase type plasminogen activator receptor#P01256#CD87|PLAU-R|PLAUR|UPA-R|soluble urokinase plasminogen activator|suPAR|urinary plasminogen activator receptor|urokinase plasminogen activator receptor|urokinase receptor#;GPI linker#SIMPLE_MOLECULE#GPI linker#S01824##
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(GPI linker/uPAR/_br_uPA)</celldesigner:name>
</celldesigner:speciesIdentity>
<celldesigner:listOfCatalyzedReactions>
<celldesigner:catalyzed reaction="r32"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s34" id="s34" name="Complex_br_(uPAR/GPI linker/_br_uPA/PAI_minus_1)" compartment="c2" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  GPI linker
Synonym:  Synonym not specified
Accession:  U05506
Heterodimer Member Info:  uPA#PROTEIN#urokinase type plasminogen activator#P01243#PLAU|plasminogen activator, urinary|urokinase#;PAI-1#PROTEIN#PAI-1#P01245#Endothelial plasminogen activator inhibitor|Plasminogen activator inhibitor 1|Serpin E1#;uPAR#PROTEIN#urokinase type plasminogen activator receptor#P01256#CD87|PLAU-R|PLAUR|UPA-R|soluble urokinase plasminogen activator|suPAR|urinary plasminogen activator receptor|urokinase plasminogen activator receptor|urokinase receptor#;GPI linker#SIMPLE_MOLECULE#GPI linker#S01824##
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(uPAR/GPI linker/_br_uPA/PAI_minus_1)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s72" id="s72" name="Complex_br_(GPI linker/uPAR/_br_uPA/PAI_minus_2)" compartment="c2" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  GPI linker
Synonym:  Synonym not specified
Accession:  U05505
Heterodimer Member Info:  uPA#PROTEIN#urokinase type plasminogen activator#P01243#PLAU|plasminogen activator, urinary|urokinase#;PAI-2#PROTEIN#PAI-2#P01244#Monocyte Arginine serpin|Monocyte derived Plasminogen activator inhibitor|PLANH2|Plasminogen activator inhibitor 2|Serpin B2|Urokinase inhibitor#;uPAR#PROTEIN#urokinase type plasminogen activator receptor#P01256#CD87|PLAU-R|PLAUR|UPA-R|soluble urokinase plasminogen activator|suPAR|urinary plasminogen activator receptor|urokinase plasminogen activator receptor|urokinase receptor#;GPI linker#SIMPLE_MOLECULE#GPI linker#S01824##
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>transmembrane</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(GPI linker/uPAR/_br_uPA/PAI_minus_2)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s47" id="s47" name="tPA" compartment="c3" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  tissue type plasminogen activator
Synonym:  PLAT,Tissue plasminogen activator,alteplase,plasminogen activator, tissue type
Accession:  P01257
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p20</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s48" id="s48" name="tPA" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  tissue type plasminogen activator
Synonym:  PLAT,Tissue plasminogen activator,alteplase,plasminogen activator, tissue type
Accession:  P01257
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p20</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
<celldesigner:listOfCatalyzedReactions>
<celldesigner:catalyzed reaction="r32"/>
</celldesigner:listOfCatalyzedReactions>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s73" id="s73" name="Complex_br_(PAI_minus_1/tPA)" compartment="default" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  Long Name:  tPA
Synonym:  Synonym not specified
Accession:  U05503
Heterodimer Member Info:  PAI-1#PROTEIN#PAI-1#P01245#Endothelial plasminogen activator inhibitor|Plasminogen activator inhibitor 1|Serpin E1#;tPA#PROTEIN#tissue type plasminogen activator#P01257#PLAT|Tissue plasminogen activator|alteplase|plasminogen activator, tissue type#
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>COMPLEX</celldesigner:class>
<celldesigner:name>Complex_br_(PAI_minus_1/tPA)</celldesigner:name>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
<species metaid="s74" id="s74" name="?" compartment="c3" initialAmount="0">
<notes>
<html xmlns="http://www.w3.org/1999/xhtml">
<body>
Long Name:  ?
Synonym:  Synonym not specified
Accession:  P01261
</body>
</html>
</notes>
<annotation>
<celldesigner:extension>
<celldesigner:positionToCompartment>inside</celldesigner:positionToCompartment>
<celldesigner:speciesIdentity>
<celldesigner:class>PROTEIN</celldesigner:class>
<celldesigner:proteinReference>p95</celldesigner:proteinReference>
</celldesigner:speciesIdentity>
</celldesigner:extension>
</annotation>
</species>
</listOfSpecies>
<listOfReactions>
<reaction metaid="r6" id="r6" reversible="false">
<annotation>
<celldesigner:extension>
<celldesigner:reactionType>HETERODIMER_ASSOCIATION</celldesigner:reactionType>
<celldesigner:baseReactants>
<celldesigner:baseReactant species="s21" alias="a36">
<celldesigner:linkAnchor position="ENE"/>
</celldesigner:baseReactant>
<celldesigner:baseReactant species="s27" alias="a44"/>
</celldesigner:baseReactants>
<celldesigner:baseProducts>
<celldesigner:baseProduct species="s34" alias="a51"/>
</celldesigner:baseProducts>
<celldesigner:connectScheme connectPolicy="direct">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection arm="0" index="0" value="unknown"/>
<celldesigner:lineDirection arm="1" index="0" value="unknown"/>
<celldesigner:lineDirection arm="2" index="0" value="unknown"/>
<celldesigner:lineDirection arm="2" index="1" value="unknown"/>
</celldesigner:listOfLineDirection>
</celldesigner:connectScheme>
<celldesigner:editPoints num0="0" num1="0" num2="1" tShapeIndex="0">0.38177149477288985,-0.06827784939177928 -0.8621871938730088,0.8601444919405148</celldesigner:editPoints>
<celldesigner:line width="1.0" color="ff000000"/>
</celldesigner:extension>
</annotation>
<listOfReactants>
<speciesReference metaid="CDMT00001" species="s21">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a36</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
<speciesReference metaid="CDMT00002" species="s27">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a44</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfReactants>
<listOfProducts>
<speciesReference metaid="CDMT00003" species="s34">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a51</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfProducts>
</reaction>
<reaction metaid="r12" id="r12" reversible="false">
<annotation>
<celldesigner:extension>
<celldesigner:reactionType>STATE_TRANSITION</celldesigner:reactionType>
<celldesigner:baseReactants>
<celldesigner:baseReactant species="s39" alias="a56"/>
</celldesigner:baseReactants>
<celldesigner:baseProducts>
<celldesigner:baseProduct species="s40" alias="a57"/>
</celldesigner:baseProducts>
<celldesigner:connectScheme connectPolicy="direct" rectangleIndex="1">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection index="0" value="unknown"/>
<celldesigner:lineDirection index="1" value="unknown"/>
<celldesigner:lineDirection index="2" value="unknown"/>
</celldesigner:listOfLineDirection>
</celldesigner:connectScheme>
<celldesigner:editPoints>0.3333333333333328,8.881784197001252E-16 0.6666666666666667,8.881784197001252E-16</celldesigner:editPoints>
<celldesigner:line width="1.0" color="ff000000"/>
<celldesigner:listOfModification>
<celldesigner:modification type="CATALYSIS" modifiers="s24" aliases="a39" targetLineIndex="-1,2" editPoints="0.24886506141344178,0.07741103894106593 0.6754104780798724,-0.0023854495565078793">
<celldesigner:connectScheme connectPolicy="direct">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection index="0" value="unknown"/>
<celldesigner:lineDirection index="1" value="unknown"/>
<celldesigner:lineDirection index="2" value="unknown"/>
</celldesigner:listOfLineDirection>
</celldesigner:connectScheme>
<celldesigner:line width="1.0" color="ff000000"/>
</celldesigner:modification>
</celldesigner:listOfModification>
</celldesigner:extension>
</annotation>
<listOfReactants>
<speciesReference metaid="CDMT00004" species="s39">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a56</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfReactants>
<listOfProducts>
<speciesReference metaid="CDMT00005" species="s40">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a57</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference metaid="CDMT00006" species="s24">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a39</celldesigner:alias>
</celldesigner:extension>
</annotation>
</modifierSpeciesReference>
</listOfModifiers>
</reaction>
<reaction metaid="r14" id="r14" reversible="false">
<annotation>
<celldesigner:extension>
<celldesigner:reactionType>TRANSPORT</celldesigner:reactionType>
<celldesigner:baseReactants>
<celldesigner:baseReactant species="s47" alias="a65"/>
</celldesigner:baseReactants>
<celldesigner:baseProducts>
<celldesigner:baseProduct species="s48" alias="a66"/>
</celldesigner:baseProducts>
<celldesigner:connectScheme connectPolicy="direct" rectangleIndex="1">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection index="0" value="unknown"/>
<celldesigner:lineDirection index="1" value="unknown"/>
<celldesigner:lineDirection index="2" value="unknown"/>
</celldesigner:listOfLineDirection>
</celldesigner:connectScheme>
<celldesigner:editPoints>0.3333333333333326,8.881784197001252E-16 0.6666666666666659,8.881784197001252E-16</celldesigner:editPoints>
<celldesigner:line width="1.0" color="ff000000"/>
</celldesigner:extension>
</annotation>
<listOfReactants>
<speciesReference metaid="CDMT00007" species="s47">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a65</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfReactants>
<listOfProducts>
<speciesReference metaid="CDMT00008" species="s48">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a66</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfProducts>
</reaction>
<reaction metaid="r15" id="r15" reversible="false">
<annotation>
<celldesigner:extension>
<celldesigner:reactionType>HETERODIMER_ASSOCIATION</celldesigner:reactionType>
<celldesigner:baseReactants>
<celldesigner:baseReactant species="s24" alias="a39"/>
<celldesigner:baseReactant species="s49" alias="a67"/>
</celldesigner:baseReactants>
<celldesigner:baseProducts>
<celldesigner:baseProduct species="s51" alias="a76"/>
</celldesigner:baseProducts>
<celldesigner:connectScheme connectPolicy="direct">
<celldesigner:listOfLineDirection>
<celldesigner:lineDirection arm="0" index="0" value="unknown"/>
<celldesigner:lineDirection arm="0" index="1" value="unknown"/>
<celldesigner:lineDirection arm="0" index="2" value="unknown"/>
<celldesigner:lineDirection arm="1" index="0" value="unknown"/>
<celldesigner:lineDirection arm="1" index="1" value="unknown"/>
<celldesigner:lineDirection arm="1" index="2" value="unknown"/>
<celldesigner:lineDirection arm="2" index="0" value="unknown"/>
<celldesigner:lineDirection arm="2" index="1" value="unknown"/>
<celldesigner:lineDirection arm="2" index="2" value="unknown"/>
</celldesigner:listOfLineDirection>
</celldesigner:connectScheme>
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<celldesigner:line width="1.0" color="ff000000"/>
</celldesigner:extension>
</annotation>
<listOfReactants>
<speciesReference metaid="CDMT00009" species="s24">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a39</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
<speciesReference metaid="CDMT00010" species="s49">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a67</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfReactants>
<listOfProducts>
<speciesReference metaid="CDMT00011" species="s51">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a76</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfProducts>
</reaction>
<reaction metaid="r16" id="r16" reversible="false">
<annotation>
<celldesigner:extension>
<celldesigner:reactionType>STATE_TRANSITION</celldesigner:reactionType>
<celldesigner:baseReactants>
<celldesigner:baseReactant species="s40" alias="a57"/>
</celldesigner:baseReactants>
<celldesigner:baseProducts>
<celldesigner:baseProduct species="s52" alias="a77"/>
</celldesigner:baseProducts>
<celldesigner:connectScheme connectPolicy="direct" rectangleIndex="1">
<celldesigner:listOfLineDirection>
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<celldesigner:lineDirection index="1" value="unknown"/>
<celldesigner:lineDirection index="2" value="unknown"/>
</celldesigner:listOfLineDirection>
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<celldesigner:editPoints>0.22825897048015964,-0.10089687135608916 0.4932775938749865,-0.16143499416972418</celldesigner:editPoints>
<celldesigner:line width="1.0" color="ff000000"/>
<celldesigner:listOfModification>
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<celldesigner:line width="1.0" color="ff000000"/>
</celldesigner:modification>
</celldesigner:listOfModification>
</celldesigner:extension>
</annotation>
<listOfReactants>
<speciesReference metaid="CDMT00012" species="s40">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a57</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfReactants>
<listOfProducts>
<speciesReference metaid="CDMT00013" species="s52">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a77</celldesigner:alias>
</celldesigner:extension>
</annotation>
</speciesReference>
</listOfProducts>
<listOfModifiers>
<modifierSpeciesReference metaid="CDMT00014" species="s53">
<annotation>
<celldesigner:extension>
<celldesigner:alias>a78</celldesigner:alias>
</celldesigner:extension>
</annotation>
</modifierSpeciesReference>
</listOfModifiers>
</reaction>
<reaction metaid="r2" id="r2" reversible="false">
<annotation>
<celldesigner:extension>
<celldesigner:reactionType>HETERODIMER_ASSOCIATION</celldesigner:reactionType>
<celldesigner:baseReactants>
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<celldesigner:baseReactant species="s3" alias="a3"/>
</celldesigner:baseReactants>
<celldesigner:baseProducts>
<celldesigner:baseProduct species="s11" alias="a21"/>
</celldesigner:baseProducts>
<celldesigner:connectScheme connectPolicy="direct">
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<celldesigner:lineDirection arm="0" index="1" value="unknown"/>
<celldesigner:lineDirection arm="0" index="2" value="unknown"/>
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<celldesigner:lineDirection arm="1" index="1" value="unknown"/>
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<listOfReactants>
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</sbml>

